tseemann / PEAR
Pair-End AssembeR
☆30Updated 10 years ago
Alternatives and similar repositories for PEAR:
Users that are interested in PEAR are comparing it to the libraries listed below
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 3 months ago
- Merging paired-end reads and removing adapters☆44Updated 4 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆41Updated this week
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆48Updated 4 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆48Updated this week
- Snakemake pipelines for nanopore sequencing data archiving and processing☆88Updated 3 years ago
- Tip and tricks for BAM files☆84Updated 6 years ago
- New version of JACUSA -> 2.0☆24Updated 3 weeks ago
- ☆54Updated 3 years ago
- Digenome-toolkit ver2.☆16Updated 3 years ago
- FEELnc : FlExible Extraction of LncRNA☆85Updated 5 months ago
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- ☆32Updated 2 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- Error correction of ONT transcript reads☆59Updated last year
- NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)☆30Updated 11 months ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆61Updated 7 months ago
- QDNAseq package for Bioconductor☆49Updated 6 months ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆70Updated 3 years ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆54Updated 2 years ago
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆137Updated 8 months ago
- Repository of common bioinformatics scripts☆39Updated 3 years ago
- ☆35Updated 3 weeks ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆24Updated 2 weeks ago
- web documentation for Trinotate☆48Updated 2 years ago
- ENCODE long read RNA-seq pipeline☆45Updated 2 years ago
- A catalogue of available long read sequencing data analysis tools☆75Updated last month
- ☆78Updated 10 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 4 months ago