tseemann / PEARLinks
Pair-End AssembeR
☆32Updated 11 years ago
Alternatives and similar repositories for PEAR
Users that are interested in PEAR are comparing it to the libraries listed below
Sorting:
- Merging paired-end reads and removing adapters☆44Updated 4 months ago
- Helper scripts for biological data processing from Sentieon☆64Updated 8 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated 2 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 4 months ago
- Analysis pipeline for the GUIDE-seq assay.☆26Updated 2 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆93Updated last month
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆38Updated 5 months ago
- SOAPdenovo-Trans, a de novo transcriptome assembler designed specifically for RNA-Seq. We evaluated its performance on transcriptome data…☆35Updated last year
- Tip and tricks for BAM files☆85Updated 6 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- Variant Calling Pipeline Using GATK4 and Nextflow☆56Updated 2 years ago
- Tools for analyzing DNA methylation data☆42Updated last week
- ☆58Updated 3 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 9 months ago
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆45Updated last year
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆64Updated last year
- FEELnc : FlExible Extraction of LncRNA☆90Updated 10 months ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- A small-RNA sequencing analysis pipeline☆87Updated last month
- Scripts for next generation sequencing☆48Updated 5 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆61Updated 9 months ago
- Automatically exported from code.google.com/p/ea-utils☆96Updated 2 years ago
- Powerful statistics for VCF files☆70Updated this week
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆106Updated 5 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆115Updated 5 months ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆112Updated last year
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆46Updated 2 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 3 years ago