Pair-End AssembeR
☆35Apr 16, 2014Updated 12 years ago
Alternatives and similar repositories for PEAR
Users that are interested in PEAR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repository of script tools, examples, and contributed code for using the MG-RAST API☆25Mar 22, 2021Updated 5 years ago
- SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.☆18Dec 4, 2017Updated 8 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated 2 years ago
- Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop☆12Nov 27, 2018Updated 7 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆64Mar 25, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- flexible barcode and adapter removal☆81Feb 10, 2023Updated 3 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Jun 22, 2016Updated 9 years ago
- GPU-accelerated DNA barcode classification☆14Jan 2, 2025Updated last year
- ☆30May 28, 2019Updated 6 years ago
- Machine Learning predictions of cancer cell sensitivity to different drugs using data from CCLE (Cancer Cell Line Encyclopedia).☆15Feb 6, 2017Updated 9 years ago
- Merging paired-end reads and removing adapters☆46Nov 7, 2025Updated 6 months ago
- ☆16Aug 1, 2022Updated 3 years ago
- FREE Divergence Error-Correcting DNA Barcodes☆29Feb 6, 2025Updated last year
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆40Jun 6, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An efficient FASTQ manipulation suite☆139Jan 27, 2020Updated 6 years ago
- The Functional Analysis through Hidden Markov Models Software and Server☆14Nov 6, 2014Updated 11 years ago
- PAired-eND Assembler for DNA sequences☆138Dec 21, 2020Updated 5 years ago
- The static pages hosted at http://paperjs.org as the Paper.js website, generated from https://github.com/paperjs/paperjs.org by running i…☆14Nov 3, 2022Updated 3 years ago
- The MG-RAST Backend -- the API server☆46Apr 27, 2023Updated 3 years ago
- ☆19May 13, 2026Updated last week
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆29Mar 19, 2021Updated 5 years ago
- Shepherd: accurate clustering for correcting DNA barcode errors: https://doi.org/10.1093/bioinformatics/btac395☆11Nov 13, 2023Updated 2 years ago
- ☆22Nov 12, 2025Updated 6 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- R package supporting interactive data access on BOLD☆22Oct 1, 2025Updated 7 months ago
- Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads.☆31Feb 3, 2026Updated 3 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated 11 months ago
- An even better Python program to query .fasta files against the COI database of www.boldsystems.org☆11Oct 28, 2024Updated last year
- Distance denoise by Entropy☆15Oct 17, 2025Updated 7 months ago
- Full GATK SNP calling pipeline☆24Oct 30, 2025Updated 6 months ago
- TreeBeST: Tree Building guided by Species Tree☆14Feb 17, 2011Updated 15 years ago
- reference implementation of GA4GH WGS Quality Control Standards☆11Nov 25, 2025Updated 6 months ago
- The Exome Coverage and Identification Report displays the coverage of every target region in your capture design. It also displays regio…☆14Apr 22, 2015Updated 11 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆24May 16, 2026Updated last week
- Multiplex Primer Design☆21Oct 30, 2020Updated 5 years ago
- Bioconductor package for analysis of methylation data from Illumina's Infinium HumanMethylation arrays.☆15Mar 3, 2025Updated last year
- Metagenomics Analysis Tools☆24May 7, 2018Updated 8 years ago
- Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options☆18May 26, 2025Updated 11 months ago
- Computational pipeline to process EasySci-RNA data.☆23Jan 17, 2024Updated 2 years ago
- deMULTIplex2: robust sample demultiplexing for scRNA-seq☆20Mar 12, 2026Updated 2 months ago