A quick workflow to get researchers started with the bioinformatic pipeline used in the Environmental Metagenomics program.
☆13Feb 17, 2025Updated last year
Alternatives and similar repositories for environmental_metagenomics
Users that are interested in environmental_metagenomics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆68Sep 5, 2024Updated last year
- Population Genomics in R workshop☆13Mar 24, 2024Updated 2 years ago
- ☆20Mar 11, 2024Updated 2 years ago
- ☆16Aug 1, 2022Updated 3 years ago
- Parser for Ghost Koala☆10Aug 23, 2018Updated 7 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆12Dec 22, 2025Updated 7 months ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆22Aug 2, 2022Updated 3 years ago
- Scripts required to calculate tetramer frequencies and create input files for ESOM. See: Dick, G.J., A. Andersson, B.J. Baker, S.S. Simmo…☆17Feb 17, 2022Updated 4 years ago
- A Nextflow full-length 16S profiling pipeline for ONT reads☆25Nov 16, 2023Updated 2 years ago
- Introduction to Ancient Metagenomics Book☆16Jul 8, 2026Updated 3 weeks ago
- AMBER: Assessment of Metagenome BinnERs☆33Jun 23, 2026Updated last month
- filtering SNPs based on LD and HWE status☆10Jul 3, 2023Updated 3 years ago
- A Nextflow pipeline for genome and pan-genome annotation☆16Feb 22, 2026Updated 5 months ago
- Transposable Element Finder - Detection of active transposable elements from NGS data☆10Apr 14, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆17May 22, 2023Updated 3 years ago
- A method of assessing sequence complexity based on kmer frequencies☆33Apr 9, 2018Updated 8 years ago
- Scripts and code for Kākāpō genomic data☆14Sep 4, 2023Updated 2 years ago
- Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads.☆31Feb 3, 2026Updated 5 months ago
- Workflows for metagenomic sequence data processing and analysis.☆16Jul 30, 2019Updated 6 years ago
- Automatically calculate phylogenetic trees from bacterial core genes☆20May 28, 2026Updated 2 months ago
- phylogenetic networks using ggplot2 and ggtree☆12Jun 11, 2026Updated last month
- Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)☆10Sep 4, 2019Updated 6 years ago
- Pooled Sequencing Analysis for Sex Signal☆15Sep 14, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ViralCC: leveraging metagenomic proximity-ligation to retrieve complete viral genomes☆18Feb 3, 2026Updated 5 months ago
- Tools for data conversion and results visualization for fineRADstructure (http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html)☆10Mar 24, 2020Updated 6 years ago
- Clustering cONtigs with COverage and ComposiTion☆140Mar 6, 2020Updated 6 years ago
- The MG-RAST pipeline☆25Nov 30, 2022Updated 3 years ago
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆24Feb 22, 2026Updated 5 months ago
- Detecting cancer subtypes with machine learning.☆10Feb 5, 2020Updated 6 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆23Sep 5, 2025Updated 10 months ago
- A user-friendly tool to screen antimicrobial resistance in fungal genomes☆20May 8, 2026Updated 2 months ago
- mapping files for MetaCyc pathway☆13Sep 14, 2019Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Repository containing scripts and files for 16S gene community analysis chapter in Methods in Molecular Biology☆25May 22, 2019Updated 7 years ago
- Automated Rice Variant calling workflow for HPC, Cloud and Desktop systems.☆13May 11, 2024Updated 2 years ago
- Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop☆12Nov 27, 2018Updated 7 years ago
- The cdom package implements various functions used to model and calculate metrics from absorption spectra of chromophotic dissolved organ…☆12May 12, 2026Updated 2 months ago
- A community effort to create a shared resource for HMM-based RdRp discovery☆17Jul 14, 2026Updated 2 weeks ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆25Apr 13, 2020Updated 6 years ago
- ☆22Oct 31, 2025Updated 8 months ago