GenomicsAotearoa / environmental_metagenomicsLinks
A quick workflow to get researchers started with the bioinformatic pipeline used in the Environmental Metagenomics program.
☆12Updated 10 months ago
Alternatives and similar repositories for environmental_metagenomics
Users that are interested in environmental_metagenomics are comparing it to the libraries listed below
Sorting:
- ☆28Updated 2 weeks ago
- MAG Circularization Method☆32Updated 2 months ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 8 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Bacterial GWAS analysis☆46Updated 2 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated last month
- Metagenomic Analysis in Real Time☆29Updated last month
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆39Updated 3 months ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆17Updated 3 years ago
- A Nextflow pipeline designed to classify, align and assemble nanopore metagenomic reads.☆16Updated 9 months ago
- Calculate assocations between genes and traits☆29Updated 9 months ago
- Automatic eukaryotic taxonomic classification☆29Updated 7 months ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆17Updated last month
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated 2 years ago
- MAGScoT - a MAG scoring and refinement tool☆41Updated last year
- ☆13Updated 8 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 5 years ago
- Tools for extracting individual genomes from metagenomes☆16Updated 2 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 8 months ago
- Gene Absence Presence Identification tool.☆27Updated 9 months ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 3 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆61Updated 2 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆32Updated this week
- Discover and annotate the virome☆58Updated 2 months ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆45Updated 5 months ago