rrwick / Compare-annotationsLinks
A script for comparing old vs new versions of genome annotations
☆21Updated 2 years ago
Alternatives and similar repositories for Compare-annotations
Users that are interested in Compare-annotations are comparing it to the libraries listed below
Sorting:
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Intra-species bacterial contamination detection☆25Updated 6 months ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- Bacterial GWAS analysis☆43Updated last month
- Genome size estimation from long read overlaps☆59Updated last week
- A taxonomic classifier of plasmids☆27Updated 4 years ago
- Calculate assocations between genes and traits☆25Updated 5 months ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 2 weeks ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- frame-shift correction for long-read (meta)genomics☆34Updated last year
- Recombination-free trees☆59Updated 5 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆49Updated last month
- Strain-level haplotyping for metagenomes with short or long-reads.☆53Updated 4 months ago
- strain-level analysis tools☆39Updated 10 months ago
- A pipeline for bioinformatics analysis of bacterial genomes☆30Updated 2 weeks ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated last year
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 5 months ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 4 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆37Updated 2 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆60Updated 2 months ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- Microbial agile accurate SNP Typer☆30Updated last year
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆39Updated 2 years ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆25Updated 2 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- MAGScoT - a MAG scoring and refinement tool☆36Updated 10 months ago