rrwick / Compare-annotations
A script for comparing old vs new versions of genome annotations
☆20Updated last year
Alternatives and similar repositories for Compare-annotations:
Users that are interested in Compare-annotations are comparing it to the libraries listed below
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- A pipeline for bioinformatics analysis of bacterial genomes☆28Updated this week
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆18Updated 2 years ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆24Updated 7 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆51Updated 3 weeks ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆24Updated 2 months ago
- Genome size estimation from long read overlaps☆55Updated 3 weeks ago
- Calculate assocations between genes and traits☆23Updated last month
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- Bacterial GWAS analysis☆40Updated 2 weeks ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- ZGA prokaryotic genome assembly and annotation pipeline☆12Updated 7 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆23Updated 9 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆59Updated 2 months ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆12Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 6 months ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆20Updated 6 years ago
- plasmidVerify: plasmid contig verification tool☆13Updated 5 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆44Updated last week
- Intra-species bacterial contamination detection☆25Updated 2 months ago
- Predict plasmids from uncorrected long read data☆39Updated 5 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆48Updated 2 years ago
- MAG Circularization Method☆33Updated 2 years ago
- frame-shift correction for long-read (meta)genomics☆33Updated last year
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated last year
- Plasmid exploration of bacterial genomes☆18Updated 3 years ago