rrwick / Compare-annotationsLinks
A script for comparing old vs new versions of genome annotations
☆22Updated 2 years ago
Alternatives and similar repositories for Compare-annotations
Users that are interested in Compare-annotations are comparing it to the libraries listed below
Sorting:
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 2 years ago
- Intra-species bacterial contamination detection☆25Updated 7 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆28Updated 2 months ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- Calculate assocations between genes and traits☆28Updated 6 months ago
- Bacterial GWAS analysis☆43Updated 2 months ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆30Updated last week
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 5 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- Recombination-free trees☆60Updated last month
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 3 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated last month
- Automated strain separation of low-complexity metagenomes☆50Updated 3 years ago
- Predict plasmids from uncorrected long read data☆40Updated 5 years ago
- strain-level analysis tools☆39Updated 11 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆55Updated 5 months ago
- MAG Circularization Method☆32Updated 3 years ago
- ZGA prokaryotic genome assembly and annotation pipeline☆13Updated last year
- Discover and annotate the virome☆53Updated last week
- Strain Resolution ON Graphs☆47Updated 2 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆26Updated 3 years ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆25Updated 2 months ago
- Order and orientation of complete bacterial genomes☆28Updated 2 months ago