jertubiana / ProteinMotifRBMLinks
Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox
☆20Updated 6 years ago
Alternatives and similar repositories for ProteinMotifRBM
Users that are interested in ProteinMotifRBM are comparing it to the libraries listed below
Sorting:
- deep protein solubility prediction☆40Updated 6 years ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆41Updated 2 years ago
- ☆32Updated 4 months ago
- ☆19Updated 10 months ago
- De novo protein structure prediction using iteratively predicted structural constraints☆60Updated 3 years ago
- Fast and accurate protein structure prediction☆57Updated last year
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆71Updated last year
- PDNET: A fully open-source framework for deep learning protein real-valued distances☆36Updated 4 years ago
- pdbx is a parser module in python for structures of the protein data bank in the mmcif format☆30Updated last year
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆39Updated 4 months ago
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆60Updated 10 months ago
- This repository contains the stand-alone tool for MusiteDeep server☆35Updated 5 years ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 5 years ago
- Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing☆23Updated 4 years ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆34Updated 4 months ago
- The standalone version of SPOT-1D-Single available for public use for research purposes.☆24Updated last year
- ☆30Updated 8 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- We introduce a differentiable approach to phylogenetic tree construction, optimizing tree and ancestral sequences in its original represe…☆20Updated 2 years ago
- PLM-interact: extending protein language models to predict protein-protein interactions.☆56Updated 4 months ago
- Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure☆52Updated 10 months ago
- Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix☆35Updated 3 years ago
- ML toolset for creating TED: The Encyclopedia of Domains☆25Updated 7 months ago
- DeepContact Software☆26Updated 7 years ago
- ☆25Updated 2 years ago
- ☆23Updated 2 months ago
- Deep learning protein-protein binding sites prediction☆22Updated 2 years ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆26Updated last year
- Deep ResNet-based protein contact prediction☆20Updated 5 years ago
- Fully convolutional neural networks for protein residue-residue contact prediction☆43Updated 6 years ago