A deep learning approach to de novo variant calling in next generation sequencing data
☆21Mar 2, 2026Updated last week
Alternatives and similar repositories for DeNovoCNN
Users that are interested in DeNovoCNN are comparing it to the libraries listed below
Sorting:
- ☆13Dec 16, 2024Updated last year
- A customizable genetic variants file format converter.☆11Oct 7, 2025Updated 5 months ago
- An insertion caller for Illumina paired-end WGS data.☆24Aug 22, 2025Updated 6 months ago
- ☆13Jul 17, 2024Updated last year
- Gene copy number prediction from k-mer frequencies☆15Jul 29, 2024Updated last year
- Determining tandem repeat lengths using raw nanopore signals.☆15Sep 11, 2023Updated 2 years ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆91Sep 16, 2025Updated 5 months ago
- Complex structural variant visualization for HiFi sequencing data☆47Oct 24, 2025Updated 4 months ago
- VILOCA: VIral LOcal haplotype reconstruction and mutation CAlling for short and long read data☆23Oct 21, 2025Updated 4 months ago
- ☆16Aug 1, 2022Updated 3 years ago
- NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data☆19Jan 13, 2026Updated last month
- ☆49Sep 4, 2025Updated 6 months ago
- ☆18Mar 14, 2022Updated 3 years ago
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆19Dec 6, 2023Updated 2 years ago
- Distributed and cloud computing framework for vg☆23Feb 27, 2026Updated last week
- Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis☆24Dec 15, 2025Updated 2 months ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆20Sep 12, 2021Updated 4 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆24Sep 12, 2025Updated 5 months ago
- Manipulate and generate figures for trees in Newick format☆22Jul 31, 2025Updated 7 months ago
- ☆28Sep 11, 2025Updated 5 months ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 3 months ago
- ☆21Feb 25, 2026Updated last week
- A program to detect denovo-variants using next-generation sequencing data.☆55Mar 30, 2020Updated 5 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Apr 29, 2024Updated last year
- Accompanying analysis code for the FRASER manuscript☆25Aug 27, 2020Updated 5 years ago
- A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats☆28Dec 15, 2025Updated 2 months ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆26Nov 14, 2025Updated 3 months ago
- genetic variant expressions, annotation, and filtering for great good.☆273Dec 15, 2025Updated 2 months ago
- Automatically design multiplex PCR primer pairs for diverse templates☆31May 23, 2024Updated last year
- A high performance tool to identify orthologs and paralogs across genomes.☆27Mar 8, 2023Updated 3 years ago
- An R Package for Multiplex PCR Primer Design and Analysis☆30Jul 12, 2025Updated 7 months ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆73Feb 19, 2019Updated 7 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Sep 4, 2024Updated last year
- Structural variant VCF annotation, duplicate removal and comparison☆36Oct 14, 2025Updated 4 months ago
- Python client library for Guppy☆32Aug 15, 2022Updated 3 years ago
- Tool to find regions of homozygosity (ROHs) from sequencing data.☆35Jun 17, 2024Updated last year
- A machine learning tool to predict tandem repeat pathogenicity☆12Jan 2, 2024Updated 2 years ago
- A Tool to Annotate and Prioritize Exome Variants☆246Feb 28, 2026Updated last week
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated last month