Genome-Bioinformatics-RadboudUMC / DeNovoCNN
A deep learning approach to de novo variant calling in next generation sequencing data
☆14Updated last year
Alternatives and similar repositories for DeNovoCNN:
Users that are interested in DeNovoCNN are comparing it to the libraries listed below
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆66Updated 4 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆88Updated 2 years ago
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆77Updated 2 years ago
- ☆39Updated 9 months ago
- Structural Variant Index☆70Updated last month
- Tool to find regions of homozygosity (ROHs) from sequencing data.☆31Updated 7 months ago
- ENCODE long read RNA-seq pipeline☆44Updated 2 years ago
- FEELnc : FlExible Extraction of LncRNA☆84Updated 4 months ago
- Helper scripts for biological data processing from Sentieon☆64Updated 2 months ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆60Updated last year
- Tools for working with second gen assemblies, fasta sequences, etc☆92Updated 8 years ago
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆32Updated 10 months ago
- Structural variant caller for real-time long-read sequencing data☆56Updated 2 years ago
- Simple code snippets and data for the One Flowcell - One Assembly study☆36Updated 7 years ago
- ☆79Updated 8 months ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆62Updated last year
- Toolkit for calling structural variants using short or long reads☆100Updated this week
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆102Updated this week
- Simple pileup-based variant caller☆85Updated 9 months ago
- Same species annotation lift over pipeline.☆96Updated last year
- Wally: Visualization of aligned sequencing reads and contigs☆110Updated last month
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- Fast and accurate coordinate conversion between assemblies☆112Updated 3 months ago
- QDNAseq package for Bioconductor☆49Updated 5 months ago
- ☆48Updated 4 months ago
- ☆51Updated 2 years ago
- A collection of command line tools for working with sequencing data☆51Updated last week
- BamDeal: a comprehensive toolkit for bam manipulation☆53Updated 2 years ago