jfmeadow / q2oligo
Convert QIIME files into Oligotyping subsets.
☆15Updated 10 years ago
Alternatives and similar repositories for q2oligo:
Users that are interested in q2oligo are comparing it to the libraries listed below
- Set of useful functions and scripts for analyzing amplicon Miseq data.☆17Updated 8 years ago
- Interactive tools for metagenome visualization and binning in R☆28Updated 6 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.☆25Updated 3 weeks ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- A very simple BLAST filtering pipeline☆18Updated 10 years ago
- Protocol for finding informative protein families and then using them to score metagenomic sets.☆9Updated 3 years ago
- Scripts required to calculate tetramer frequencies and create input files for ESOM. See: Dick, G.J., A. Andersson, B.J. Baker, S.S. Simmo…☆17Updated 2 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆43Updated 4 years ago
- ☆22Updated last year
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆53Updated 4 months ago
- Automatic eukaryotic taxonomic classification☆28Updated 3 months ago
- Improvement of metagenome-assembled genomes☆50Updated 4 years ago
- Strain Resolution ON Graphs☆47Updated last year
- Working with the outputs of sourmash in R☆26Updated last year
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆46Updated 2 years ago
- GraftM - Rapid community profiles from metagenomes☆44Updated 6 months ago
- A quick workflow to get researchers started with the bioinformatic pipeline used in the Environmental Metagenomics program.☆10Updated 8 months ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 2 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆48Updated 2 years ago
- Assessing and Improving the quality of metagenomic assemblies☆27Updated 2 years ago
- Metagenomic Analysis in Real Time☆19Updated this week
- Strain Prediction and Analysis with Representative SEquence☆18Updated last month
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆29Updated 3 years ago
- ☆13Updated 7 years ago
- ☆23Updated 6 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆30Updated last year
- MAG Circularization Method☆33Updated 2 years ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 2 years ago