jfmeadow / q2oligoLinks
Convert QIIME files into Oligotyping subsets.
☆15Updated 10 years ago
Alternatives and similar repositories for q2oligo
Users that are interested in q2oligo are comparing it to the libraries listed below
Sorting:
- Interactive tools for metagenome visualization and binning in R☆27Updated 7 years ago
- Set of useful functions and scripts for analyzing amplicon Miseq data.☆18Updated 9 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 8 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- Scripts required to calculate tetramer frequencies and create input files for ESOM. See: Dick, G.J., A. Andersson, B.J. Baker, S.S. Simmo…☆17Updated 3 years ago
- Tools for extracting individual genomes from metagenomes☆16Updated last year
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.☆31Updated this week
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆45Updated 5 years ago
- ☆23Updated 2 years ago
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆46Updated 2 weeks ago
- GraftM - Rapid community profiles from metagenomes☆45Updated last year
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 3 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated 4 months ago
- ☆23Updated 7 years ago
- ☆55Updated 2 weeks ago
- ☆14Updated 7 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- Basic Sequence Taxonomy Annotator☆42Updated last year
- Working with the outputs of sourmash in R☆27Updated last year
- Speedy versions of phyloseq functions☆47Updated last year
- Protocol for finding informative protein families and then using them to score metagenomic sets.☆10Updated 3 years ago
- Tools for visualising microbial community amplicon data☆69Updated last month
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆71Updated last year
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- Metagenomic Analysis in Real Time☆28Updated last week