jfmeadow / q2oligoLinks
Convert QIIME files into Oligotyping subsets.
☆15Updated 10 years ago
Alternatives and similar repositories for q2oligo
Users that are interested in q2oligo are comparing it to the libraries listed below
Sorting:
- Interactive tools for metagenome visualization and binning in R☆28Updated 7 years ago
- Set of useful functions and scripts for analyzing amplicon Miseq data.☆18Updated 8 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 3 years ago
- Basic Sequence Taxonomy Annotator☆41Updated last year
- Scripts required to calculate tetramer frequencies and create input files for ESOM. See: Dick, G.J., A. Andersson, B.J. Baker, S.S. Simmo…☆17Updated 3 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆46Updated 5 years ago
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.☆31Updated last week
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- Protocol for finding informative protein families and then using them to score metagenomic sets.☆10Updated 3 years ago
- 16S taxonomy assignment using an ecosystem-specific database.☆17Updated 2 years ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31Updated 4 years ago
- SHallow shOtGUN profiler☆54Updated 3 years ago
- A very simple BLAST filtering pipeline☆18Updated 11 years ago
- ☆22Updated 2 years ago
- Speedy versions of phyloseq functions☆48Updated last year
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- GraftM - Rapid community profiles from metagenomes☆46Updated last year
- paprica - PAthway PRediction by phylogenetIC plAcement☆31Updated last year
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆47Updated last week
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- Working with the outputs of sourmash in R☆28Updated last year
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- Strain Prediction and Analysis with Representative SEquence☆20Updated 8 months ago
- ☆25Updated 6 months ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- A simple script to display stuff on a world map with R and ggplot☆17Updated last year
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆48Updated 3 years ago