EPSAPG: An Extensive Protein Sequence Alignment Profiles Generator Pipeline Combining MMseqs2 and PSI-BLAST
☆11Apr 4, 2024Updated last year
Alternatives and similar repositories for EPSAPG
Users that are interested in EPSAPG are comparing it to the libraries listed below
Sorting:
- ☆24Apr 17, 2025Updated 10 months ago
- ☆15May 22, 2025Updated 9 months ago
- Sequence-based protein solubility prediction using multidimensional embedding☆12Apr 19, 2021Updated 4 years ago
- Sequence-based protein solubility predictor☆11Apr 1, 2020Updated 5 years ago
- A Prot paper related materials☆11Sep 5, 2022Updated 3 years ago
- Simple Python program to perform codon optimization or heterology calculations.☆11Apr 13, 2021Updated 4 years ago
- Protein Sequence Evolutionary Information Language Model☆13Oct 5, 2023Updated 2 years ago
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆15Aug 27, 2023Updated 2 years ago
- cross-species analysis of cell identities, markers and regulations☆12Jul 11, 2025Updated 7 months ago
- Metagenomic search for novel CRISPR-transposons☆12Sep 30, 2021Updated 4 years ago
- heterogeneous BLAST (H-BLAST), a fast parallel search tool for a heterogeneous computer that couples CPUs and GPUs, to accelerate BLASTX…☆12Jun 20, 2018Updated 7 years ago
- R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.☆16Aug 26, 2025Updated 6 months ago
- ☆30Oct 20, 2023Updated 2 years ago
- Gene orthologs for model organisms in a tidy data format☆14Sep 29, 2022Updated 3 years ago
- MetaCRAST: reference-guided CRISPR detection in metagenomes☆14Mar 10, 2020Updated 5 years ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆13Feb 12, 2026Updated 3 weeks ago
- ☆15Sep 26, 2025Updated 5 months ago
- Transfer learning for Mutation Effect Prediction☆17Feb 13, 2024Updated 2 years ago
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆16Apr 14, 2023Updated 2 years ago
- ☆18Jan 13, 2023Updated 3 years ago
- ☆16Aug 1, 2022Updated 3 years ago
- Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.☆17Mar 18, 2019Updated 6 years ago
- ViennaRNA Package consists of a C code library for the prediction and comparison of RNA secondary structures☆15May 20, 2022Updated 3 years ago
- Deep learning based alignment-free method for protein family modeling and prediction☆16Jul 31, 2018Updated 7 years ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆20Aug 9, 2022Updated 3 years ago
- Rendering protein mutation movies from predicted 3D structures☆20Dec 7, 2023Updated 2 years ago
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆22Nov 21, 2025Updated 3 months ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆19Apr 1, 2024Updated last year
- Multiple sequence aligner for protein and DNA/RNA.☆22Jan 3, 2018Updated 8 years ago
- Comprehensive cardiotoxicity prediction tool of small molecules on three targets: hERG, Nav1.5, Cav1.2☆20Sep 25, 2024Updated last year
- Phyling: phylogenetic inference from annotated genomes☆30Jan 30, 2026Updated last month
- A sequence-based pan model for peptide-MHC II binding affinity prediction.☆21May 16, 2022Updated 3 years ago
- ☆20May 7, 2024Updated last year
- Peptide library design☆23Sep 8, 2020Updated 5 years ago
- Fast and accurate protein structure prediction☆57Jan 17, 2025Updated last year
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆23Dec 20, 2024Updated last year
- Next-generation sequencing analysis pipelines & scrips☆10Nov 25, 2020Updated 5 years ago
- Automated omics-scale protein modeling and simulation setup.☆53Sep 20, 2021Updated 4 years ago