issararab / EPSAPGLinks
EPSAPG: An Extensive Protein Sequence Alignment Profiles Generator Pipeline Combining MMseqs2 and PSI-BLAST
☆11Updated last year
Alternatives and similar repositories for EPSAPG
Users that are interested in EPSAPG are comparing it to the libraries listed below
Sorting:
- Virus Protein Structural Analysis Toolkit☆14Updated last year
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆12Updated 3 years ago
- Graphical Representation of Ancestral Sequence Predictions☆12Updated 2 years ago
- Code for LazyAF pipeline☆23Updated 2 years ago
- A set a basic Python scripts to edit a multiple sequence alignment and generate a protein consensus sequence☆18Updated 3 years ago
- Rendering protein mutation movies from predicted 3D structures☆20Updated 2 years ago
- The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.☆20Updated last year
- DeepECtransformer☆29Updated 2 years ago
- Peptide library design☆23Updated 5 years ago
- Fast protein domain structure embedding+search tool☆27Updated 4 months ago
- Package that facilitates pulling database entries from KEGG via its REST API☆11Updated 2 years ago
- ☆11Updated last year
- ☆21Updated 4 months ago
- Use machine learning to design codon-optimized DNA sequences for increased protein expression.☆15Updated 3 years ago
- ☆23Updated 2 years ago
- ProQDock is a Protein-Protein docking scoring program that uses high level coordinate driven features compiled and trained by a Support V…☆11Updated 4 years ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- Python framework for doing ancestral sequence reconstruction☆44Updated last year
- A fast, alignment-free method for estimating sequence conservation using protein sequence embedding☆17Updated 3 years ago
- Finding patch of conserved amino acid sites in 3D structure☆13Updated 9 months ago
- Pipeline for Nanopore sequencing: demultiplexing, variant calling, and quality visualization with error handling.☆10Updated 2 weeks ago
- Long disorder consensus predictor☆18Updated 5 months ago
- An improved method for predicting toxicity of the peptides and designing of non-toxic peptides☆26Updated 8 months ago
- antimicrobial peptide prediction in R☆33Updated last year
- ☆19Updated last year
- Ancestral Sequence Reconstruction in Python☆14Updated 6 years ago
- Protein discovery tool for mining in the Alphafold database based on the position of few amino acids.☆29Updated 3 weeks ago
- ☆30Updated 2 years ago
- Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.☆18Updated 2 years ago
- The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.☆17Updated 2 years ago