Alternatives and similar repositories for EPSAPG

Users that are interested in EPSAPG are comparing it to the libraries listed below

• jnoms / vpSAT
  Virus Protein Structural Analysis Toolkit
  ☆14Updated last year
• cbcrg / msa-af2-nf
  Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models
  ☆12Updated 2 years ago
• PombertLab / 3DFI
  The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.
  ☆20Updated last year
• infernet-h2020 / DCAlign
  ☆11Updated last year
• MoseleyBioinformaticsLab / kegg_pull
  Package that facilitates pulling database entries from KEGG via its REST API
  ☆11Updated 2 years ago
• bodenlab / GRASP
  Graphical Representation of Ancestral Sequence Predictions
  ☆12Updated 2 years ago
• samsledje / philharmonic
  Decoding the functional networks of non-model organisms
  ☆11Updated last week
• hzi-bifo / epitope-prediction
  ☆19Updated last year
• lasersonlab / pepsyn
  Peptide library design
  ☆23Updated 5 years ago
• msternke / protein-consensus-sequence
  A set a basic Python scripts to edit a multiple sequence alignment and generate a protein consensus sequence
  ☆18Updated 3 years ago
• Zsailer / pyasr
  Ancestral Sequence Reconstruction in Python
  ☆14Updated 6 years ago
• ayaanhossain / ViennaRNA
  ViennaRNA Package consists of a C code library for the prediction and comparison of RNA secondary structures
  ☆14Updated 3 years ago
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆41Updated last year
• andyposbe / ColabFold-Pipeline-Toolkit
  The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.
  ☆16Updated last year
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆21Updated last year
• drgoulet / Codon-optimization
  Use machine learning to design codon-optimized DNA sequences for increased protein expression.
  ☆15Updated 3 years ago
• esbgkannan / chumby
  A package for making tree-based visualizations for embedding vectors
  ☆10Updated 2 years ago
• wallnerlab / ProQDock
  ProQDock is a Protein-Protein docking scoring program that uses high level coordinate driven features compiled and trained by a Support V…
  ☆11Updated 4 years ago
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆29Updated 2 years ago
• Legana / ampir
  antimicrobial peptide prediction in R
  ☆33Updated 11 months ago
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆27Updated 2 months ago
• amaurypm / pseqsid
  Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.
  ☆18Updated last year
• vicruiser / 3Dmapper
  Map genetic variants and protein positions to protein interfaces in 3D
  ☆13Updated 2 years ago
• tdseher / simple-codon-optimizer
  Simple Python program to perform codon optimization or heterology calculations.
  ☆11Updated 4 years ago
• kWeissenow / MutAmore
  Rendering protein mutation movies from predicted 3D structures
  ☆20Updated 2 years ago
• romainstuder / evosite3d
  ☆21Updated 2 months ago
• KULL-Centre / _2022_functional-sites-cagiada
  ☆23Updated 2 years ago
• nmatzke / 3diphy
  Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…
  ☆22Updated 7 months ago
• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆25Updated 6 months ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆31Updated 2 years ago