issararab / EPSAPG
EPSAPG: An Extensive Protein Sequence Alignment Profiles Generator Pipeline Combining MMseqs2 and PSI-BLAST
☆11Updated 11 months ago
Alternatives and similar repositories for EPSAPG:
Users that are interested in EPSAPG are comparing it to the libraries listed below
- Fast protein domain structure embedding+search tool☆15Updated last week
- DeepECtransformer☆24Updated last year
- ☆22Updated last year
- Code for LazyAF pipeline☆21Updated last year
- Ancestral Sequence Reconstruction in Python☆13Updated 5 years ago
- The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.☆16Updated last year
- Rendering protein mutation movies from predicted 3D structures☆20Updated last year
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆12Updated 2 years ago
- A set a basic Python scripts to edit a multiple sequence alignment and generate a protein consensus sequence☆16Updated 2 years ago
- Evolutionary conservation estimation of residues or nucleotides☆37Updated 3 years ago
- Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…☆19Updated 9 months ago
- A package for making tree-based visualizations for embedding vectors☆9Updated 2 years ago
- The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.☆19Updated last year
- Peptide library design☆22Updated 4 years ago
- Protein discovery tool for mining in the Alphafold database based on the position of few amino acids.☆22Updated this week
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆28Updated last year
- ☆11Updated last year
- Use machine learning to design codon-optimized DNA sequences for increased protein expression.☆15Updated 2 years ago
- Python framework for doing ancestral sequence reconstruction☆38Updated 8 months ago
- A platform to do RNA science☆27Updated 4 years ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆17Updated 5 years ago
- ☆29Updated last year
- ☆34Updated 6 months ago
- Scripts to generate and analyze afdb clusters☆11Updated last year
- ☆11Updated 3 months ago
- ☆31Updated 7 months ago
- a collection of colabs useful for molecular biology☆31Updated last year
- an accurate approach for predicting protein-protein affinity changes upon interfacial amino-acid mutations by combining physics and evolu…☆12Updated last year
- A Python package for mapping sequence aligned data onto protein structures☆35Updated 3 years ago
- Fast, sensitive and accurate protein remote homology search on GPUs☆15Updated 10 months ago