unipept / FragGeneScanRs
Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads.
☆26Updated 3 months ago
Alternatives and similar repositories for FragGeneScanRs:
Users that are interested in FragGeneScanRs are comparing it to the libraries listed below
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 3 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆23Updated 9 months ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated this week
- Microbial agile accurate SNP Typer☆29Updated last year
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆44Updated 2 weeks ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 2 weeks ago
- ☆16Updated 3 months ago
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆30Updated last month
- Bacterial GWAS analysis☆40Updated 2 weeks ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆51Updated 3 weeks ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆29Updated 3 months ago
- software to identify primers that can distinguish genomes☆21Updated 3 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆34Updated 2 years ago
- ☆45Updated last year
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆19Updated 2 years ago
- Calculate assocations between genes and traits☆23Updated last month
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆20Updated 8 months ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- MAG Circularization Method☆33Updated 2 years ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- Strain Resolution ON Graphs☆47Updated last year
- alignment-free coverage calculation for metagenomic binning >100 times faster☆43Updated last month
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆33Updated last year
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆25Updated 3 weeks ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated this week
- strain-level analysis tools☆36Updated 6 months ago