unipept / FragGeneScanRsLinks
Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads.
☆26Updated last week
Alternatives and similar repositories for FragGeneScanRs
Users that are interested in FragGeneScanRs are comparing it to the libraries listed below
Sorting:
- Microbial agile accurate SNP Typer☆30Updated last year
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆53Updated 4 months ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated this week
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆41Updated 4 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- strain-level analysis tools☆39Updated 10 months ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆37Updated last year
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 3 years ago
- tree visualization for tree + annotation data☆39Updated 2 months ago
- snapper☆13Updated last year
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆40Updated 11 months ago
- Strain Resolution ON Graphs☆48Updated 2 years ago
- ☆24Updated 7 months ago
- Recombination-free trees☆59Updated 5 months ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 5 months ago
- Colinear block visualisation tool☆31Updated last year
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated this week
- ☆50Updated 3 months ago
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆47Updated last month
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆49Updated last month
- MAGScoT - a MAG scoring and refinement tool☆36Updated 10 months ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated last week
- Evaluating Nanopore-based bacterial variant calling☆19Updated last month
- Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆45Updated last month
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Updated last year
- Bacterial GWAS analysis☆43Updated last month
- Scalable creating/updating of metagenome profiling databases☆63Updated 2 months ago
- ☆14Updated 4 years ago