unipept / FragGeneScanRsLinks
Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads.
☆27Updated 2 weeks ago
Alternatives and similar repositories for FragGeneScanRs
Users that are interested in FragGeneScanRs are comparing it to the libraries listed below
Sorting:
- Microbial agile accurate SNP Typer☆29Updated last year
- Automated strain separation of low-complexity metagenomes☆50Updated 3 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆55Updated 6 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- Recombination-free trees☆60Updated last month
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 3 years ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated last month
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- Colinear block visualisation tool☆31Updated last year
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆43Updated 6 months ago
- strain-level analysis tools☆39Updated 11 months ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- Automatic eukaryotic taxonomic classification☆28Updated 5 months ago
- ☆24Updated 8 months ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆37Updated last year
- snapper☆13Updated last year
- viralFlye pipeline☆18Updated last year
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆30Updated 2 months ago
- ☆30Updated 2 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated last week
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Updated 9 months ago
- Bacterial GWAS analysis☆43Updated 2 months ago
- Strain Resolution ON Graphs☆47Updated 2 years ago
- Evaluating Nanopore-based bacterial variant calling☆19Updated 2 months ago
- Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆45Updated 3 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆43Updated last month
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 7 months ago