CGView is a Java package for generating high-quality, zoomable maps of circular genomes.
☆55Mar 2, 2026Updated 3 months ago
Alternatives and similar repositories for cgview
Users that are interested in cgview are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.☆37Apr 13, 2024Updated 2 years ago
- CGView.js creates interactive circular and linear genome maps.☆47Jun 5, 2026Updated last week
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆12Dec 16, 2022Updated 3 years ago
- ☆23Apr 13, 2026Updated 2 months ago
- Align multiple amino acid or nucleotide sequences.☆87Sep 17, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Mass screening of contigs for antimicrobial and virulence genes☆495Apr 3, 2026Updated 2 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆650May 15, 2026Updated last month
- ☆15Oct 7, 2025Updated 8 months ago
- Repo for Proksee Cmd Line Tools☆29Feb 22, 2023Updated 3 years ago
- Web content for Meren Lab☆11Updated this week
- Automated pipeline for whole bacterial genome analysis based on snakemake☆12May 16, 2022Updated 4 years ago
- Filter fasta/fastq(.gz) files by ID and/or sequence length☆14Feb 8, 2020Updated 6 years ago
- ☆11Feb 9, 2024Updated 2 years ago
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆122May 29, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- hybrid assembly pipeline for bacterial genomes☆643Jul 25, 2024Updated last year
- Automatically exported from code.google.com/p/qsimscan☆14Oct 10, 2021Updated 4 years ago
- HMmer Based UndeRstandinG of gene clustERs☆15Feb 6, 2026Updated 4 months ago
- ☆51May 22, 2026Updated 3 weeks ago
- Phigaro is a scalable command-line tool for predicting phages and prophages☆53Jan 8, 2024Updated 2 years ago
- Whole genome core alignments from multiple draft genomes☆13Sep 14, 2016Updated 9 years ago
- Bioinformatics tool to find integrons in bacterial genomes☆87May 7, 2025Updated last year
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆40Apr 20, 2026Updated last month
- Tools to analyze the differences and similarities between CRISPR arrays☆11Dec 17, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A collection of simple JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. The Sequence Manipu…☆87Apr 30, 2026Updated last month
- Generating iToL annotations from Spreadsheet or CSV files☆109May 15, 2020Updated 6 years ago
- A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets☆31Nov 9, 2025Updated 7 months ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆40Nov 14, 2025Updated 7 months ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆30Mar 31, 2015Updated 11 years ago
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆21Jun 1, 2026Updated 2 weeks ago
- ☆16Aug 1, 2022Updated 3 years ago
- A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concat…☆60May 7, 2026Updated last month
- A full and working Python implementation of sed☆16Sep 12, 2022Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Automatically design multiplex PCR primer pairs for diverse templates☆35May 23, 2024Updated 2 years ago
- GC Skew Test for Bacterial Genomes☆32Sep 29, 2022Updated 3 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Jun 1, 2026Updated 2 weeks ago
- Create a tree using Mash distances☆188Oct 24, 2023Updated 2 years ago
- Locus and lineage tests for bacterial GWAS☆28Oct 5, 2017Updated 8 years ago
- Automatically exported from code.google.com/p/figtree☆474May 17, 2026Updated 3 weeks ago
- A whole-genome and alignment-free prokaryotic phylogeny tool☆23May 26, 2026Updated 3 weeks ago