paulstothard / cgviewLinks
CGView is a Java package for generating high-quality, zoomable maps of circular genomes.
☆50Updated last year
Alternatives and similar repositories for cgview
Users that are interested in cgview are comparing it to the libraries listed below
Sorting:
- GTDB taxonomy taxdump files with trackable TaxIds☆56Updated 8 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆37Updated 6 years ago
- Taxonomic classification of viruses at Order and Family level☆21Updated 2 years ago
- Prediction of prophages from bacterial genomes☆81Updated 6 months ago
- ☆61Updated last year
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆72Updated 3 years ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆75Updated 2 years ago
- A program for detection of tRNA genes☆78Updated 3 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆82Updated 3 months ago
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆60Updated 3 months ago
- A toolbox for comparative genomics.☆107Updated 4 years ago
- Convert GFF, fastas, annotation table and species name into Genbank.☆17Updated 7 months ago
- ☆64Updated last year
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆83Updated this week
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
- IS mapping software☆57Updated 4 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated 2 months ago
- Development version of Easyfig☆102Updated 2 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆27Updated 8 months ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆52Updated 3 weeks ago
- ☆81Updated last month
- Horizontal gene transfer (HGT) identification pipeline☆65Updated 2 years ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Updated last year
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆83Updated last year
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆60Updated last year
- FastOMA is a scalable software package to infer orthology relationship.☆86Updated last week
- CLI tool to annotate genes with KOfam☆87Updated 2 years ago