A deep learning based approach to predict Antibiotic Resistance Genes (ARGs) from metagenomes. It provides two models,deepARG-SS and deepARG-LS.
☆55Nov 15, 2023Updated 2 years ago
Alternatives and similar repositories for deeparg
Users that are interested in deeparg are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆19Apr 1, 2025Updated 11 months ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆34Jul 12, 2022Updated 3 years ago
- ARG normalization by mapping to the ARO ontology.☆63Jul 30, 2025Updated 7 months ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆48Apr 14, 2020Updated 5 years ago
- ☆20Sep 4, 2024Updated last year
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32May 22, 2020Updated 5 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Jan 24, 2025Updated last year
- ☆50Updated this week
- Parser for Ghost Koala☆10Aug 23, 2018Updated 7 years ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Feb 17, 2021Updated 5 years ago
- ☆38Mar 26, 2025Updated 11 months ago
- Nature Communications | BASALT (Binning Across a Series of Assemblies Toolkit) for binning and refinement of short- and long-read sequenc…☆128Feb 8, 2026Updated last month
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Apr 4, 2023Updated 2 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆82Sep 8, 2025Updated 6 months ago
- ☆63Feb 27, 2024Updated 2 years ago
- Professional Comprehensive Omics Data Analysis☆32Feb 10, 2026Updated last month
- ☆18Dec 7, 2020Updated 5 years ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.