Alternatives and similar repositories for deeparg

Users that are interested in deeparg are comparing it to the libraries listed below

• AnantharamanLab / ViWrap
  A wrapper to identify, bin, classify, and predict host-viral relationship for viruses
  ☆83Updated last year
• ziyewang / MetaBinner
  ☆61Updated last year
• linxingchen / cobra
  A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…
  ☆82Updated 3 months ago
• HubertTang / PLASMe
  ☆32Updated last year
• samnooij / PathoFact
  Altered version of PathoFact to work more conveniently with SLURM and large input files
  ☆14Updated last year
• ziyewang / COMEBin
  ☆64Updated last year
• XiaofangJ / PhaseFinder
  A pipeline to computationally identify invertible DNA regions and quantify their orientations.
  ☆31Updated last year
• xinehc / args_oap
  ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…
  ☆67Updated 9 months ago
• chengsly / DeepMicroClass
  ☆31Updated 10 months ago
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆124Updated 2 years ago
• snayfach / MGV
  Supporting code for uncultivated gut virus manuscript
  ☆77Updated 2 years ago
• AnantharamanLab / vRhyme
  Binning Virus Genomes from Metagenomes
  ☆68Updated 3 years ago
• allind / EukDetect
  ☆56Updated 5 months ago
• franciscozorrilla / SymbNET
  Teaching materials for SymbNET course: from MAGs to GEMs
  ☆14Updated last year
• songweizhi / MetaCHIP
  Horizontal gene transfer (HGT) identification pipeline
  ☆65Updated 2 years ago
• gem-pasteur / macsyfinder
  MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.
  ☆70Updated last week
• Gibbons-Lab / pipelines
  Pipelines used in the lab.
  ☆15Updated 9 months ago
• liu-congcong / MetaDecoder
  An algorithm for clustering metagenomic sequences.
  ☆40Updated 2 weeks ago
• caozhichongchong / arg_ranker
  ☆35Updated last month
• Finn-Lab / MAG_Snakemake_wf
  Recovery of prokaryotic genomes from shotgun metagenomic sequencing data
  ☆62Updated 4 years ago
• michaelkyu / PlasX
  PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture
  ☆40Updated 3 years ago
• feargalr / Demovir
  Taxonomic classification of viruses at Order and Family level
  ☆21Updated 2 years ago
• padlocbio / padloc
  Locate antiviral defence systems in prokaryotic genomes
  ☆64Updated last year
• zhenchengfang / PPR-Meta
  A tool for identifying phages and plasmids from metagenomic fragments using deep learning
  ☆45Updated 4 years ago
• raw-lab / MetaCerberus
  Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…
  ☆63Updated 3 weeks ago
• Carrion-lab / bacLIFE
  ☆50Updated 3 weeks ago
• nekokoe / Plasmer
  An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.
  ☆49Updated 2 years ago
• GreyGuoweiChen / VirBot
  VirBot: a protein-based RNA virus detector for metagenomic data
  ☆34Updated last year
• happykhan / BRIG
  BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…
  ☆37Updated 6 years ago
• EBI-Metagenomics / mettannotator
  ☆81Updated last month