omixer / omixer-rpmR

Related projects ⓘ

Alternatives and complementary repositories for omixer-rpmR

• victoriapascal / gutsmash
  gutSMASH
  ☆52Updated last month
• raeslab / omixer-rpm
  A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.
  ☆26Updated 6 years ago
• nselem / corason
  Bioinformatic Tools for study Evolution of metabolic diversity
  ☆30Updated 8 months ago
• XiaofangJ / PhaseFinder
  A pipeline to computationally identify invertible DNA regions and quantify their orientations.
  ☆28Updated 10 months ago
• kelwyres / Bactabolize
  ☆35Updated 2 weeks ago
• leylabmpi / endoR
  Code and manual of the endoR R-package (Ruaud et al, in preparation).
  ☆12Updated last year
• EBI-Metagenomics / mettannotator
  ☆57Updated this week
• Gibbons-Lab / pipelines
  Pipelines used in the lab.
  ☆11Updated last month
• ziyewang / MetaBinner
  ☆48Updated 8 months ago
• ohmeta / metapi
  A general metagenomics data mining system focus on robust microbiome research
  ☆56Updated 2 months ago
• ohlab / GRiD
  Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …
  ☆31Updated 4 years ago
• iquasere / KEGGCharter
  A tool for representing genomic potential and transcriptomic expression into KEGG pathways
  ☆52Updated 3 months ago
• franciscozorrilla / SymbNET
  Teaching materials for SymbNET course: from MAGs to GEMs
  ☆13Updated 10 months ago
• donia-lab / MetaBGC
  A metagenomic strategy for harnessing the chemical repertoire of the human microbiome
  ☆32Updated last year
• caozhichongchong / arg_ranker
  ☆27Updated 10 months ago
• liu-congcong / MetaDecoder
  An algorithm for clustering metagenomic sequences.
  ☆30Updated 9 months ago
• biocore / q2-greengenes2
  A QIIME 2 plugin for interaction with the Greengenes2 database
  ☆26Updated last month
• YDaiLab / MiMeNet
  ☆19Updated 3 years ago
• ohlab / SMEG
  Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset
  ☆20Updated 4 years ago
• EBI-Metagenomics / genomes-catalogue-pipeline
  MGnify genome analysis pipeline
  ☆101Updated this week
• cjneely10 / MetaSanity
  Pipeline for major biological analyses.
  ☆34Updated 2 years ago
• christophertbrown / iRep
  scripts for estimating bacteria replication rates based on population genome copy number variation
  ☆68Updated 4 years ago
• linxingchen / cobra
  A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…
  ☆61Updated 3 months ago
• KennthShang / PhaBOX
  Local version of the virus identification and analysis web server (tool set)
  ☆37Updated this week
• samnooij / PathoFact
  Altered version of PathoFact to work more conveniently with SLURM and large input files
  ☆10Updated 2 weeks ago
• annejong / BAGEL4
  ☆10Updated last year
• AnantharamanLab / vRhyme
  Binning Virus Genomes from Metagenomes
  ☆58Updated 2 years ago
• gem-pasteur / macsyfinder
  MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.
  ☆51Updated last week
• medema-group / BiG-MAP
  ☆27Updated 9 months ago
• segalab / SGVFinder
  ☆30Updated last year