omixer / omixer-rpmR
An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles
☆12Updated 2 years ago
Alternatives and similar repositories for omixer-rpmR:
Users that are interested in omixer-rpmR are comparing it to the libraries listed below
- Metagenome analysis using the Kraken software suite☆31Updated 2 years ago
- A QIIME 2 plugin for interaction with the Greengenes2 database☆28Updated 7 months ago
- ☆18Updated 4 years ago
- gutSMASH☆53Updated 4 months ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 6 years ago
- metabolic heatmap☆20Updated 5 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated 3 weeks ago
- ☆11Updated last month
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year
- A Shiny app for taxonomic abundance visualization☆7Updated last year
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated 3 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆33Updated last year
- Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset☆20Updated 4 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year
- Integrative virome pipeline☆13Updated 6 months ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆40Updated 4 months ago
- A general metagenomics data mining system focus on robust microbiome research☆57Updated 7 months ago
- ☆15Updated last year
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- Teaching materials for SymbNET course: from MAGs to GEMs☆13Updated last year
- KEGG Module Evaluation Tool☆29Updated last year
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32Updated 4 years ago
- ☆29Updated last month
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆21Updated 2 years ago
- Viral protein family functional prediction using protein language models☆19Updated 11 months ago
- Analyses in R and Python Using curatedMetagenomicData☆31Updated last month
- Protein Alignment and Detection Interface☆61Updated last year
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆20Updated 2 months ago
- ☆26Updated last year