An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles
☆12Nov 3, 2026Updated this week
Alternatives and similar repositories for omixer-rpmR
Users that are interested in omixer-rpmR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆28Updated this week
- ☆11Aug 4, 2026Updated 3 months ago
- MicrobeRX☆17Aug 11, 2025Updated last year
- A manually curated database of human gut metabolic modules.☆19Oct 26, 2026Updated last week
- An interactive radial tree for functional hierarchies and omics data visualization☆25Mar 27, 2026Updated 7 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- An R package for visualizing confounder control in meta-analyses☆11Jan 17, 2023Updated 3 years ago
- ☆23Sep 28, 2026Updated last month
- ☆22Sep 4, 2024Updated 2 years ago
- Workshop materials for the Second Benthic Invertebrates, Metagenomics, and Bioinformatics Workshop at the TAMUCC Harte Institute in Corpu…☆22Jan 19, 2018Updated 8 years ago
- Database of genomes integrated from the gut microbiome and other environments☆45Feb 3, 2023Updated 3 years ago
- On-instrument and post-acquisition targeted feature extraction☆13Updated this week
- Benchmark of differential abundance methods on microbiome data☆10Oct 9, 2025Updated last year
- Interactive package for Short AsyNchronous Time-series Analysis (SANTA) in R, implemented in Shiny☆11Mar 6, 2024Updated 2 years ago
- Automatically exported from code.google.com/p/qsimscan☆14Oct 30, 2026Updated last week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆12Feb 22, 2022Updated 4 years ago
- CGView is a Java package for generating high-quality, zoomable maps of circular genomes.☆57Mar 2, 2026Updated 8 months ago
- Functions for compositional analysis of high throughput sequencing☆29Dec 8, 2023Updated 2 years ago
- Semi-parametric simulation of bulk and single cell RNA-seq data☆10Nov 17, 2024Updated last year
- A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets☆32Nov 9, 2025Updated 11 months ago
- ☆20Jun 14, 2024Updated 2 years ago
- ☆17Mar 3, 2023Updated 3 years ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆11Oct 12, 2023Updated 3 years ago
- ORFFinder in Python☆14Aug 24, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Tool for reliability assessment of omics peprocessing☆12Jan 13, 2026Updated 9 months ago
- FLYCOP (FLexible sYnthetic Consortium OPtimization)☆12Sep 24, 2018Updated 8 years ago
- Plann: a command-line application for annotating plastome sequences☆14Aug 5, 2022Updated 4 years ago
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated last year
- MAGinator - Accurate SNV calling and profiling of MAGs☆29Mar 23, 2026Updated 7 months ago
- SHAMAN is a SHiny application for Metagenomic ANalysis including a bioinformatic workflow, the statistical analysis and multiple visualiz…☆13Feb 5, 2025Updated last year
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆89Oct 19, 2026Updated 2 weeks ago
- Generating dynamic structures through physics-based sampling of trRosettaX2-predicted inter-residue geometries☆11Mar 17, 2026Updated 7 months ago
- ☆28Oct 5, 2018Updated 8 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆16Mar 21, 2023Updated 3 years ago
- Radboud Summer Course 7/2021 https://www.ru.nl/radboudsummerschool/courses/2021/brain-bacteria-behaviour/☆12Aug 12, 2021Updated 5 years ago
- Altered version of PathoFact to work more conveniently with SLURM and large input files☆14Nov 7, 2024Updated 2 years ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆128Oct 25, 2026Updated last week
- simple and not slow ORF caller☆24Apr 7, 2026Updated 7 months ago
- ☆10Mar 24, 2026Updated 7 months ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Mar 3, 2023Updated 3 years ago