omixer / omixer-rpmRLinks
An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles
☆12Updated 2 years ago
Alternatives and similar repositories for omixer-rpmR
Users that are interested in omixer-rpmR are comparing it to the libraries listed below
Sorting:
- A QIIME 2 plugin for interaction with the Greengenes2 database☆30Updated 9 months ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 6 years ago
- ☆18Updated 4 years ago
- ☆20Updated 4 years ago
- Integrative virome pipeline☆13Updated 8 months ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated last month
- gutSMASH☆55Updated 6 months ago
- Metagenome analysis using the Kraken software suite☆32Updated 2 years ago
- The Microbial Co-occurrence Network Explorer☆21Updated last year
- ☆11Updated 4 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated 3 months ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year
- Pipeline for major biological analyses.☆35Updated 3 years ago
- metabolic heatmap☆20Updated 6 years ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆34Updated last year
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆22Updated 4 months ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆30Updated 5 months ago
- A Shiny app for taxonomic abundance visualization☆7Updated last year
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- A general metagenomics data mining system focus on robust microbiome research☆57Updated 10 months ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆24Updated 2 years ago
- MicrobeRX☆11Updated 3 months ago
- A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets☆27Updated 6 months ago
- Protein Alignment and Detection Interface☆61Updated last year
- ☆31Updated 2 weeks ago
- KBase distribution module for RASTtk.☆13Updated 4 years ago
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆22Updated 4 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆43Updated 6 months ago
- Batch effects removal for microbiome data via conditional quantile regression☆30Updated 2 years ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆31Updated 11 months ago