Support scripts for the visualisation of pangenome analyses in Graphia
☆21Oct 7, 2024Updated last year
Alternatives and similar repositories for GraPPLE
Users that are interested in GraPPLE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysing the genomic context of mobile genes☆11Jul 21, 2025Updated 8 months ago
- All scripts used for the analysis of the twilight of the pan-genome, and scripts available for others to apply similar analysis☆19Mar 30, 2021Updated 4 years ago
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆17Feb 26, 2026Updated last month
- Package to extract Unannotated Regions from prokaryotic genomes report coding and pseudogenised genes delimited by stop codons - Named S…☆17Jan 15, 2026Updated 2 months ago
- kMetaShot is an alignment-free taxonomic classifier based on k-mer/minimizer counting for MAGs☆11Mar 20, 2026Updated last week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.☆28Feb 14, 2023Updated 3 years ago
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆110Oct 20, 2023Updated 2 years ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Jun 17, 2022Updated 3 years ago
- TQSLE v1.0 released☆10Aug 29, 2023Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Jul 17, 2020Updated 5 years ago
- Inferring global and local strict molecular clocks using root-to-tip regression☆15Nov 17, 2025Updated 4 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆65Jun 16, 2025Updated 9 months ago
- ☆25Apr 20, 2023Updated 2 years ago
- Professional Comprehensive Omics Data Analysis☆32Feb 10, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Pipeline for homeobox gene identification☆11Aug 8, 2023Updated 2 years ago
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated 6 months ago
- ☆19Nov 11, 2024Updated last year
- ☆11Mar 11, 2025Updated last year
- A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses☆21Feb 12, 2026Updated last month
- Parallel/Homoplasic SNP Finder☆21May 3, 2023Updated 2 years ago
- R markdown documents copied from other folders on Dec 15th 2021☆14Nov 4, 2025Updated 4 months ago
- A bacterial GWAS pipeline written in Nextflow that uses Pyseer; Part III Project for Systems Biology at the University of Cambridge☆21Jan 20, 2026Updated 2 months ago
- Integrate multiple genome assemblies into a pangenome graph☆37Jun 9, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- scripts for sequence and feature conversion, annotation, analysis ...☆28Mar 17, 2025Updated last year
- ☆11Feb 4, 2026Updated last month
- ☆30Mar 20, 2026Updated last week
- A method for reconstruction of subspecies composition and functional profiles from metagenomic data☆13May 27, 2024Updated last year
- Characterization of Structural Variation in Chinese samples☆18Dec 22, 2021Updated 4 years ago
- Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.☆18Mar 18, 2026Updated last week
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Dec 16, 2024Updated last year
- This is the source code for ARGs-OAP v2.0 construction☆12Aug 1, 2019Updated 6 years ago
- ☆18Jun 30, 2023Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A library of Machine Learning tools to predict antibiotic resistance from NGS data☆18May 30, 2022Updated 3 years ago
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Mar 18, 2026Updated last week
- snapper☆13Jul 8, 2024Updated last year
- Fast pairwise transmission inference from single genome and/or metagenomic data☆24Aug 1, 2025Updated 7 months ago
- Code for the paper "Learning the fitness dynamics of pathogens from phylogenies"☆23Feb 26, 2026Updated last month
- A toolbox for pangenome analysis and threshold evaluation.☆100Jul 8, 2022Updated 3 years ago