genomicepidemiology / ARGprofilerLinks
A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets
☆27Updated 4 months ago
Alternatives and similar repositories for ARGprofiler
Users that are interested in ARGprofiler are comparing it to the libraries listed below
Sorting:
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- Metagenomics-related extended functionalities to samtools☆21Updated last year
- ☆27Updated last year
- Improvement of metagenome-assembled genomes☆52Updated 5 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆41Updated 7 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 2 weeks ago
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆26Updated last month
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated last month
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆59Updated 9 months ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆36Updated 2 months ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆58Updated last month
- ☆50Updated last year
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32Updated 5 years ago
- ☆71Updated last month
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆34Updated 3 years ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆42Updated 2 years ago
- ☆24Updated 6 years ago
- BEAV: Bacterial Element Annotation reVamped☆66Updated 7 months ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- ☆47Updated 3 months ago
- ☆20Updated 9 months ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- ☆30Updated last week
- A workflow and scripts for large-scale antiSMASH analyses☆41Updated 2 months ago
- ARG normalization by mapping to the ARO ontology.☆57Updated last month
- ☆54Updated last year
- Bioinformatic Tools for study Evolution of metabolic diversity☆34Updated last year
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆34Updated 6 years ago
- Prophage Activity Estimator☆26Updated last year