snayfach / MicrobeCensus
MicrobeCensus estimates the average genome size of microbial communities from metagenomic data
☆45Updated 5 years ago
Alternatives and similar repositories for MicrobeCensus
Users that are interested in MicrobeCensus are comparing it to the libraries listed below
Sorting:
- Estimate metagenomic coverage and sequence diversity☆51Updated 9 months ago
- Improvement of metagenome-assembled genomes☆52Updated 5 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- ☆50Updated last year
- A toolbox for improving metagenome-assembled genomes.☆63Updated 3 years ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated this week
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆53Updated 2 weeks ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated last year
- GraftM - Rapid community profiles from metagenomes☆45Updated 9 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆49Updated 10 months ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆14Updated 2 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆40Updated 6 months ago
- Sparse Cooccurence Network Investigation for Compositional data☆24Updated 6 months ago
- ☆24Updated 6 years ago
- ☆20Updated 8 months ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆20Updated last year
- Discover and annotate the virome☆42Updated 3 weeks ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32Updated 4 years ago
- Split Kmer Analysis☆63Updated 2 years ago
- Microbial Populations as Clusters Of Gene Transfer☆44Updated last year
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆46Updated 3 years ago
- Metagenomics-related extended functionalities to samtools☆21Updated last year
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 5 years ago
- Horizontal gene transfer (HGT) identification pipeline☆57Updated last year