Carrion-lab / bacLIFELinks
☆48Updated 6 months ago
Alternatives and similar repositories for bacLIFE
Users that are interested in bacLIFE are comparing it to the libraries listed below
Sorting:
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆59Updated 4 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆62Updated 3 weeks ago
- ARG normalization by mapping to the ARO ontology.☆58Updated last month
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 3 weeks ago
- CLI tool to annotate genes with KOfam☆86Updated 2 years ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆71Updated 3 months ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- ☆53Updated last month
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆73Updated 2 months ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆74Updated 2 months ago
- Binning Virus Genomes from Metagenomes☆66Updated 3 years ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated last year
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 3 weeks ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆50Updated last month
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 6 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆96Updated last month
- ☆75Updated this week
- Downstream processing of VAMB binning for Viral Elucidation☆51Updated last year
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆50Updated 3 years ago
- A toolkit for prokaryotic comparative genomics☆50Updated 7 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆37Updated 3 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆85Updated 3 months ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆46Updated 2 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆38Updated 4 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆41Updated 4 months ago
- ☆44Updated last week
- tiara – a tool for DNA sequence classification☆66Updated last year
- ☆27Updated last year