☆50Mar 18, 2026Updated last week
Alternatives and similar repositories for bacLIFE
Users that are interested in bacLIFE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bacterial GWAS analysis☆47Updated this week
- A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.☆28Feb 14, 2023Updated 3 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆50Mar 13, 2025Updated last year
- Small utility script to submit genomes to PHASTER for phage detection☆26Oct 21, 2021Updated 4 years ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆104Jun 25, 2023Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆14Oct 14, 2023Updated 2 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆35Dec 4, 2025Updated 3 months ago
- 16S pipeline using qiime2 created with snakemake☆12Jan 2, 2026Updated 2 months ago
- ☆81Mar 19, 2026Updated last week
- ☆17May 13, 2025Updated 10 months ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆82May 3, 2025Updated 10 months ago
- ☆20Jan 23, 2019Updated 7 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Aug 8, 2022Updated 3 years ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆41Feb 26, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆29Jan 15, 2026Updated 2 months ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆97Aug 11, 2025Updated 7 months ago
- Metabolic scanning and annotation of Metagenomes☆10Dec 18, 2025Updated 3 months ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 4 years ago
- ☆20Sep 4, 2024Updated last year
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆13Feb 9, 2025Updated last year
- Bacterial Annotation by Learned Representation of Genes☆60Jan 22, 2021Updated 5 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆64Jan 19, 2026Updated 2 months ago
- 🪡Correct and scaffold assemblies using long reads☆57Mar 10, 2026Updated 2 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- PGPg_finder is a command-line tool that offers different workflows for genome and metagenome annotation of Plant-Growth Promotion Genes. …☆29Jan 20, 2026Updated 2 months ago
- A deep learning based approach to predict Antibiotic Resistance Genes (ARGs) from metagenomes. It provides two models,deepARG-SS and deep…☆55Nov 15, 2023Updated 2 years ago
- Similarity networks of biosynthetic gene clusters☆157Mar 19, 2026Updated last week
- Calculate assocations between genes and traits☆29Mar 10, 2025Updated last year
- IS mapping software☆57Dec 3, 2021Updated 4 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆613Feb 18, 2026Updated last month
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆110Oct 20, 2023Updated 2 years ago
- BEAV: Bacterial Element Annotation reVamped☆76Aug 21, 2025Updated 7 months ago
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆106Jan 22, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Predict AMPs in (meta)genomes and peptides☆91Nov 24, 2025Updated 4 months ago
- annotating microbial co-occurrence networks☆12Oct 7, 2025Updated 5 months ago
- Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasm…☆51Feb 2, 2021Updated 5 years ago
- All scripts used for the analysis of the twilight of the pan-genome, and scripts available for others to apply similar analysis☆19Mar 30, 2021Updated 4 years ago
- Evodictor is a software package for learning patterns and predicting the future of evolution by gain/losses of given traits☆14Sep 27, 2024Updated last year
- A bacterial GWAS pipeline written in Nextflow that uses Pyseer; Part III Project for Systems Biology at the University of Cambridge☆21Jan 20, 2026Updated 2 months ago
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆215Aug 27, 2025Updated 6 months ago