Carrion-lab / bacLIFELinks
☆50Updated last month
Alternatives and similar repositories for bacLIFE
Users that are interested in bacLIFE are comparing it to the libraries listed below
Sorting:
- ☆54Updated 4 months ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆63Updated last month
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆67Updated this week
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 3 months ago
- ARG normalization by mapping to the ARO ontology.☆59Updated 3 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆81Updated last month
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆52Updated 3 weeks ago
- Binning Virus Genomes from Metagenomes☆66Updated 3 years ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆74Updated 6 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 8 months ago
- CLI tool to annotate genes with KOfam☆85Updated 2 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆80Updated 2 months ago
- ☆62Updated last year
- ☆59Updated last year
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated last year
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 3 months ago
- Linking MAGs with 16S rRNA marker genes☆26Updated 9 months ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆85Updated 6 months ago
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆63Updated 3 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆39Updated 3 years ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆49Updated 2 years ago
- ☆79Updated this week
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆50Updated 3 years ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆55Updated 5 months ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 3 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year