BigDataBiology / argNorm
ARG normalization by mapping to the ARO ontology.
☆47Updated this week
Alternatives and similar repositories for argNorm:
Users that are interested in argNorm are comparing it to the libraries listed below
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆57Updated last week
- ☆69Updated last month
- Tool to estimate genome quality of microbial eukaryotes☆37Updated 2 months ago
- Binning Virus Genomes from Metagenomes☆62Updated 2 years ago
- BEAV: Bacterial Element Annotation reVamped☆64Updated 5 months ago
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆48Updated 2 years ago
- A toolkit for prokaryotic comparative genomics☆47Updated 3 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 2 months ago
- Reorients assembled microbial sequences☆116Updated 3 weeks ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆61Updated 3 months ago
- Bifrost graph gene caller.☆93Updated 7 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆40Updated 6 months ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆62Updated this week
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆76Updated 7 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated last year
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆70Updated 8 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆45Updated 3 weeks ago
- GTDB taxonomy taxdump files with trackable TaxIds☆52Updated last year
- A pipeline for running AMRfinderPlus and collating results into functional classes☆76Updated 8 months ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆47Updated 3 months ago
- IS mapping software☆53Updated 3 years ago
- ☆50Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆49Updated 9 months ago
- Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …☆32Updated last year
- Code Safety Inspection Service☆20Updated 2 years ago
- Metagenomics-related extended functionalities to samtools☆21Updated last year
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 3 weeks ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆58Updated 4 months ago