BigDataBiology / argNorm
ARG normalization by mapping to the ARO ontology.
☆28Updated this week
Alternatives and similar repositories for argNorm:
Users that are interested in argNorm are comparing it to the libraries listed below
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆51Updated last month
- post processing of bacterial pangenome gene presence/absence matrices☆54Updated 4 months ago
- A tool for removing redundant genomes from a set of assemblies☆70Updated last year
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆53Updated 3 weeks ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆55Updated 3 weeks ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆18Updated 9 months ago
- Binning Virus Genomes from Metagenomes☆59Updated 2 years ago
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆37Updated 3 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆47Updated 6 months ago
- Bifrost graph gene caller.☆91Updated 3 months ago
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆48Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 3 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆87Updated this week
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆34Updated last month
- whole genome MLST analysis☆40Updated 8 months ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆44Updated last month
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆56Updated this week
- Discover and annotate the virome☆35Updated 3 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆72Updated 4 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated 9 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆41Updated 2 weeks ago
- Bacterial GWAS analysis☆34Updated last month
- A toolkit for prokaryotic comparative genomics☆38Updated 2 months ago
- ☆57Updated 3 weeks ago
- Recombination-free trees☆56Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆25Updated 2 months ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated last year
- ☆26Updated 9 months ago