Simple R utilities for working with HMMER
☆19Oct 3, 2024Updated last year
Alternatives and similar repositories for rhmmer
Users that are interested in rhmmer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Aug 13, 2024Updated 2 years ago
- ☆24May 13, 2024Updated 2 years ago
- ☆14Mar 28, 2018Updated 8 years ago
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆15Nov 24, 2025Updated 8 months ago
- STAMPS 2018 course☆14Aug 8, 2018Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Simple Python interface to CoverM's fast coverage estimation functions☆11Dec 20, 2024Updated last year
- Assort phage protein sequences into phamilies using MMseqs2☆12Dec 16, 2024Updated last year
- R Data Exploration for Serratus☆16Mar 29, 2023Updated 3 years ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Nov 7, 2025Updated 9 months ago
- GraftM - Rapid community profiles from metagenomes☆56Nov 6, 2025Updated 9 months ago
- Fast alignment-free pangenome creation and exploration☆28Apr 16, 2020Updated 6 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- Hydrocarbon biodegradation gene annotation☆19Jul 14, 2022Updated 4 years ago
- Protein orthologous group assignment with deep learning☆30Dec 16, 2025Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Nextflow language support for Visual Studio Editor☆38Updated this week
- MetaCRAST: reference-guided CRISPR detection in metagenomes☆13Mar 10, 2020Updated 6 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆48Feb 5, 2026Updated 6 months ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆79Jul 29, 2026Updated 2 weeks ago
- Disty McMatrixface - compute a distance matrix from a core genome alignment file☆15Mar 15, 2023Updated 3 years ago
- finding conserved regions in highly diverse genomes☆16May 25, 2026Updated 2 months ago
- D3 based visualisation for comparative genomics☆15Oct 6, 2016Updated 9 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆26Jul 22, 2024Updated 2 years ago
- R package for searching, downloading and analysis of EBI MGnify metagenomics data☆23Feb 13, 2026Updated 6 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆66Apr 22, 2026Updated 3 months ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆29Jun 12, 2026Updated 2 months ago
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆54Jul 10, 2026Updated last month
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆85Sep 8, 2025Updated 11 months ago
- Minimum Bait Cover Toolkit Syotti.☆15Jan 22, 2025Updated last year
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated last year
- ☆16Jun 2, 2021Updated 5 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Mar 5, 2026Updated 5 months ago
- ☆24Feb 7, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.