arendsee / rhmmer
Simple R utilities for working with HMMER
☆18Updated 5 months ago
Alternatives and similar repositories for rhmmer:
Users that are interested in rhmmer are comparing it to the libraries listed below
- Speedy versions of phyloseq functions☆47Updated 11 months ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆14Updated 2 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated last month
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 2 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated 10 months ago
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆30Updated last year
- functions for analyzing phyloseq data☆26Updated last month
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- statdivlab's teaching materials for STAMPS @ the MBL in 2019☆12Updated 5 years ago
- Talk to the NCBI EUtils☆22Updated 4 years ago
- accessory functions for processing microbial community data☆12Updated 2 years ago
- Non parametric differential abundance tests for microbiome data☆9Updated 3 years ago
- R package for microbial pangenomics☆23Updated 2 years ago
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA☆35Updated 5 years ago
- Workshop for NGS'18 conference, Barcelona 2018☆24Updated 6 years ago
- Linear Decomposition Model☆24Updated last year
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆35Updated 11 months ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated this week
- Experimental pipeline to perform de novo PICRUSt on de-noised amplicon sequence variants (ASV)☆19Updated 6 years ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆35Updated 9 years ago
- A synthesis of bacterial and archaeal phenotypic trait data☆33Updated last year
- Working with the outputs of sourmash in R☆26Updated last year
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- 16S taxonomy assignment using an ecosystem-specific database.☆16Updated 2 years ago
- ☆10Updated 2 weeks ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated 2 years ago