Alternatives and similar repositories for rhmmer

Users that are interested in rhmmer are comparing it to the libraries listed below

• brendankelly / micropower
  power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA
  ☆39Updated 9 years ago
• mikemc / speedyseq
  Speedy versions of phyloseq functions
  ☆48Updated last year
• adw96 / DivNet
  diversity estimation under ecological networks
  ☆83Updated 2 months ago
• itsmisterbrown / microfiltR
  accessory functions for processing microbial community data
  ☆12Updated 2 years ago
• KasperSkytte / ampvis2
  Tools for visualising microbial community amplicon data
  ☆69Updated last month
• reptalex / phylofactor
  ☆28Updated last year
• ggloor / ALDEx_bioc
  ALDEx_bioc is the working directory for updating bioconductor
  ☆28Updated 5 months ago
• larssnip / micropan
  R package for microbial pangenomics
  ☆24Updated 3 years ago
• Arcadia-Science / sourmashconsumr
  Working with the outputs of sourmash in R
  ☆27Updated last year
• sherrillmix / taxonomizr
  Parse NCBI taxonomy and accessions to find taxonomic assignments
  ☆77Updated 2 months ago
• Lagkouvardos / Rhea
  A set of R scripts for the analysis of microbial profiles
  ☆41Updated last year
• adw96 / breakaway
  Species richness with high diversity
  ☆67Updated 2 months ago
• SchlossLab / schtools
  Schloss Lab Tools for Reproducible Microbiome Research 💩
  ☆31Updated 2 years ago
• statdivlab / stamps2019
  statdivlab's teaching materials for STAMPS @ the MBL in 2019
  ☆12Updated 6 years ago
• OSS-Lab / MetQy
  Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)
  ☆18Updated 3 years ago
• jgolob / maliampi
  Maximum Likelihood Amplicon Pipeline
  ☆22Updated last year
• BradyAJohnston / plasmapR
  Creating plasmid maps inside ggplot.
  ☆89Updated last month
• nhanhocu / metamicrobiomeR
  An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…
  ☆34Updated 4 years ago
• nextgenusfs / amptk
  AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
  ☆38Updated last year
• drostlab / orthologr
  Genome wide orthology inference and dNdS estimation
  ☆96Updated last month
• schuyler-smith / phylosmith
  functions for analyzing phyloseq data
  ☆28Updated 8 months ago
• Russel88 / DAtest
  Compare different differential abundance and expression methods
  ☆52Updated 3 years ago
• zoecastillo / microbiomeExplorer
  The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…
  ☆72Updated 3 years ago
• microsud / dysbiosisR
  The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures
  ☆15Updated 2 years ago
• microsud / microbiomeutilities
  The is mostly a wrapper tool using phyloseq and microbiome R packages.
  ☆33Updated 2 years ago
• Sanrrone / multiGenomicContext
  multiGenomicContext is a pipeline to see your protein in many genomic context as much as gbk you have.
  ☆10Updated 3 years ago
• ggloor / CoDaSeq
  Functions for compositional analysis of high throughput sequencing
  ☆29Updated last year
• vallenderlab / MicrobiomeR
  A comprehensive and customizable R package for microbiome analysis.
  ☆23Updated 2 months ago
• yijuanhu / LDM-Archive
  Linear Decomposition Model
  ☆25Updated 2 years ago
• lakarstens / ControllingContaminants16S
  ☆13Updated 5 years ago