Simple R utilities for working with HMMER
☆19Oct 3, 2024Updated 2 years ago
Alternatives and similar repositories for rhmmer
Users that are interested in rhmmer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Aug 13, 2024Updated 2 years ago
- ☆24May 13, 2024Updated 2 years ago
- ☆14Mar 28, 2018Updated 8 years ago
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆15Nov 24, 2025Updated 10 months ago
- STAMPS 2018 course☆14Aug 8, 2018Updated 8 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Simple Python interface to CoverM's fast coverage estimation functions☆11Dec 20, 2024Updated last year
- Assort phage protein sequences into phamilies using MMseqs2☆12Dec 16, 2024Updated last year
- R Data Exploration for Serratus☆17Mar 29, 2023Updated 3 years ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆22Nov 7, 2025Updated 11 months ago
- GraftM - Rapid community profiles from metagenomes☆56Nov 6, 2025Updated 11 months ago
- Fast alignment-free pangenome creation and exploration☆28Apr 16, 2020Updated 6 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- Hydrocarbon biodegradation gene annotation☆19Jul 14, 2022Updated 4 years ago
- Protein orthologous group assignment with deep learning☆30Dec 16, 2025Updated 10 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Nextflow language support for Visual Studio Editor☆38Updated this week
- MetaCRAST: reference-guided CRISPR detection in metagenomes☆13Mar 10, 2020Updated 6 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆48Feb 5, 2026Updated 8 months ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆78Updated this week
- finding conserved regions in highly diverse genomes☆16May 25, 2026Updated 4 months ago
- Disty McMatrixface - compute a distance matrix from a core genome alignment file☆15Mar 15, 2023Updated 3 years ago
- D3 based visualisation for comparative genomics☆15Oct 6, 2016Updated 10 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆26Jul 22, 2024Updated 2 years ago
- R package for searching, downloading and analysis of EBI MGnify metagenomics data☆23Feb 13, 2026Updated 8 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆67Apr 22, 2026Updated 5 months ago
- Minimum Bait Cover Toolkit Syotti.☆15Jan 22, 2025Updated last year
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated last year
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆85Sep 8, 2025Updated last year
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆56Sep 28, 2026Updated 2 weeks ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆29Jun 12, 2026Updated 4 months ago
- ☆26Feb 7, 2022Updated 4 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Mar 5, 2026Updated 7 months ago
- ☆16Jun 2, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- RNAsik - more than just a pipeline☆14Feb 6, 2024Updated 2 years ago
- ☆58May 5, 2025Updated last year
- consensus approach for community profiling with nanopore amplicon sequencing data☆18Sep 30, 2024Updated 2 years ago
- BEAV: Bacterial Element Annotation reVamped☆78Aug 21, 2025Updated last year
- Pipeline automatizado de dados públicos do Brasil: DATASUS (SIM, SINASC, CNES, SIH, SIA, SINAN, CIHA) e IBGE - direto pro Kaggle em Parqu…☆96Oct 9, 2026Updated last week
- some useful scripts for working with genomics and sequencing data☆18Oct 31, 2019Updated 6 years ago
- geNomad: Identification of mobile genetic elements☆337Updated this week