hzi-bifo / traitar
From genomes to phenotypes: Traitar, the microbial trait analyzer
☆59Updated 5 years ago
Alternatives and similar repositories for traitar:
Users that are interested in traitar are comparing it to the libraries listed below
- scripts for estimating bacteria replication rates based on population genome copy number variation☆71Updated 5 years ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆69Updated 9 months ago
- GraftM - Rapid community profiles from metagenomes☆45Updated 8 months ago
- Convert GTDB taxonomy to NCBI taxdump format☆68Updated last year
- ☆81Updated last year
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆44Updated 4 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆52Updated 11 months ago
- IS mapping software☆53Updated 3 years ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Split Kmer Analysis☆63Updated 2 years ago
- ☆50Updated last year
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆56Updated last month
- A toolbox for improving metagenome-assembled genomes.☆63Updated 3 years ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 4 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆72Updated 2 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Improvement of metagenome-assembled genomes☆51Updated 5 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆39Updated 5 months ago
- Horizontal gene transfer (HGT) identification pipeline☆57Updated last year
- Estimate metagenomic coverage and sequence diversity☆48Updated 8 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆34Updated 6 years ago
- Binning Virus Genomes from Metagenomes☆62Updated 2 years ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆76Updated 6 months ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 5 years ago
- Supporting code for uncultivated gut virus manuscript☆70Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆58Updated this week
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year