ohlab / GRiDLinks
Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at ultra-low sequencing coverage (> 0.2x).
☆32Updated 5 years ago
Alternatives and similar repositories for GRiD
Users that are interested in GRiD are comparing it to the libraries listed below
Sorting:
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 3 weeks ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆73Updated 5 years ago
- ☆53Updated last month
- MAGinator - Accurate SNV calling and profiling of MAGs☆23Updated 3 months ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆39Updated last month
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆62Updated this week
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- ☆26Updated 2 years ago
- Protocol for finding informative protein families and then using them to score omic samples☆18Updated 3 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆37Updated 3 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆46Updated 5 years ago
- ☆40Updated last year
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆31Updated 3 years ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆43Updated 2 years ago
- BEAV: Bacterial Element Annotation reVamped☆68Updated last week
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆59Updated 4 months ago
- ☆44Updated last week
- Downstream processing of VAMB binning for Viral Elucidation☆51Updated last year
- KEGG Module Evaluation Tool☆30Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated last month
- A workflow and scripts for large-scale antiSMASH analyses☆41Updated 4 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- Linking MAGs with 16S rRNA marker genes☆26Updated 6 months ago
- ☆46Updated 2 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets☆27Updated 7 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- Ready-to-use pipeline to detect, count and identify the hgcAB genes, involved in mercury methylation, from metagenomes☆10Updated last year
- ☆15Updated last year