ohlab / GRiDLinks
Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at ultra-low sequencing coverage (> 0.2x).
☆32Updated 5 years ago
Alternatives and similar repositories for GRiD
Users that are interested in GRiD are comparing it to the libraries listed below
Sorting:
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 5 months ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆73Updated 6 years ago
- ☆56Updated 6 months ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆46Updated 3 weeks ago
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- Metagenomics-related extended functionalities to samtools☆22Updated 2 years ago
- ☆44Updated last year
- BEAV: Bacterial Element Annotation reVamped☆73Updated 5 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated 2 weeks ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Updated 3 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆47Updated 5 years ago
- MAGinator - Accurate SNV calling and profiling of MAGs☆25Updated 8 months ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Updated 2 years ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- ☆26Updated 2 years ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆13Updated 3 months ago
- Automatic eukaryotic taxonomic classification☆29Updated 8 months ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆17Updated 3 years ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆33Updated 3 years ago
- ☆45Updated 2 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 9 months ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆89Updated last year
- Gene Absence Presence Identification tool.☆27Updated 9 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆45Updated 5 months ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆63Updated last month
- Downstream processing of VAMB binning for Viral Elucidation☆54Updated last year
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 5 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆40Updated 3 months ago