biofuture / Ublastx_stageoneLinks
This is the source code for multisamples ARGs profiling using SARG2.0 database
☆46Updated 4 years ago
Alternatives and similar repositories for Ublastx_stageone
Users that are interested in Ublastx_stageone are comparing it to the libraries listed below
Sorting:
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆52Updated 4 years ago
- ☆53Updated 5 years ago
- Horizontal gene transfer (HGT) identification pipeline☆67Updated 2 years ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆73Updated 5 years ago
- code repo for mobileOG-db☆46Updated 3 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆71Updated 10 months ago
- A pipeline for nanopore long-read metagenomic analysis.☆53Updated 2 months ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆62Updated 4 years ago
- Metatranscriptomics Tutorial☆66Updated 2 years ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 6 years ago
- Generating iToL annotations from Spreadsheet or CSV files☆108Updated 5 years ago
- A toolbox for comparative genomics.☆108Updated 4 years ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆86Updated last year
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆49Updated 2 years ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆92Updated 7 months ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆81Updated 2 years ago
- Rapid and scalable correlation estimation for compositional data☆97Updated last year
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆61Updated last year
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆89Updated 2 years ago
- ☆84Updated 2 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆82Updated 5 months ago
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆143Updated 2 years ago
- ☆79Updated this week
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆125Updated 2 weeks ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆89Updated last year
- Prediction of prophages from bacterial genomes☆81Updated last week
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆96Updated last year
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆104Updated 2 months ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆57Updated 3 years ago