This is the source code for multisamples ARGs profiling using SARG2.0 database
☆46Feb 17, 2021Updated 5 years ago
Alternatives and similar repositories for Ublastx_stageone
Users that are interested in Ublastx_stageone are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆77Aug 28, 2026Updated 2 months ago
- This is the source code for ARGs-OAP v2.0 construction☆13Aug 1, 2019Updated 7 years ago
- MetaCompare☆20Mar 3, 2024Updated 2 years ago
- A deep learning based approach to predict Antibiotic Resistance Genes (ARGs) from metagenomes. It provides two models,deepARG-SS and deep…☆61Apr 30, 2026Updated 6 months ago
- ☆19Oct 9, 2017Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆40Oct 12, 2026Updated 3 weeks ago
- Pilea: profiling bacterial growth dynamics from metagenomes with sketching☆13Oct 21, 2026Updated last week
- ☆14Mar 18, 2023Updated 3 years ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆55Aug 16, 2021Updated 5 years ago
- Software for prediction of plasmid sequences in metagenomic assemblies☆111Jun 28, 2021Updated 5 years ago
- ☆10Jun 9, 2020Updated 6 years ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆481Oct 9, 2026Updated 3 weeks ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆50Apr 14, 2020Updated 6 years ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆172Jun 10, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆64Dec 30, 2020Updated 5 years ago
- Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasm…☆53Feb 2, 2021Updated 5 years ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆75Oct 6, 2020Updated 6 years ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆236Updated this week
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Aug 13, 2020Updated 6 years ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆436Oct 17, 2026Updated 2 weeks ago
- Source code for the crAssphage project☆52Nov 11, 2025Updated 11 months ago
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…☆20Apr 8, 2022Updated 4 years ago
- code repo for mobileOG-db☆52Jul 30, 2026Updated 3 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆39Jul 12, 2022Updated 4 years ago
- A comprehensive pipeline for short read metagenomic data☆25Aug 25, 2020Updated 6 years ago
- Bioinformatics tool to find integrons in bacterial genomes☆95May 7, 2025Updated last year
- Horizontal gene transfer (HGT) identification pipeline☆74May 17, 2023Updated 3 years ago
- Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"☆53Dec 9, 2021Updated 4 years ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Apr 4, 2023Updated 3 years ago
- Fast and accurate Average Genome Size and 16S rRNA gene Average Copy Number computation in metagenomic data☆17Dec 20, 2024Updated last year
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆16Mar 2, 2023Updated 3 years ago
- Fast and robust identificaiton of antibiotic resistance genes (ARGs) from microbial genomes and metagenome assemblies using ARGfams, a hi…☆11Dec 30, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆10Apr 8, 2021Updated 5 years ago
- Quorum sensing gene database for archaea and bacteria☆10Aug 31, 2023Updated 3 years ago
- ☆15Jan 1, 2026Updated 10 months ago
- ☆10Oct 10, 2020Updated 6 years ago
- ☆25Apr 13, 2026Updated 6 months ago
- ARGpore2☆13Oct 10, 2026Updated 3 weeks ago
- MEGARes and AmrPlusPlus - A comprehensive database of antimicrobial resistance genes and user-friendly pipeline for analysis of high-thro…☆26Nov 14, 2022Updated 3 years ago