RNAsik - more than just a pipeline
☆13Feb 6, 2024Updated 2 years ago
Alternatives and similar repositories for RNAsik-pipe
Users that are interested in RNAsik-pipe are comparing it to the libraries listed below
Sorting:
- variant discovery and annotation using GATK and Ensembl☆17Jun 27, 2013Updated 12 years ago
- Prokaryotic virus Host Predictor (PHP) is a computational tool for host prediction of prokaryotic viruses based on Gaussian Model (GM). P…☆12Jan 8, 2021Updated 5 years ago
- Printing text using protein structures☆14Aug 9, 2021Updated 4 years ago
- The open source version of the Melbourne Genomics Health Alliance Exome Sequencing Pipeline☆33Jan 20, 2018Updated 8 years ago
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL.☆14Nov 29, 2013Updated 12 years ago
- Northern Arizona SNP Pipeline☆20Oct 29, 2024Updated last year
- NGS duplicate marking☆19Apr 6, 2021Updated 4 years ago
- A deep learning based approach to predict Antibiotic Resistance Genes (ARGs) from metagenomes. It provides two models,deepARG-SS and deep…☆53Nov 15, 2023Updated 2 years ago
- Computes a consensus sequence with wobbles, ambiguous bases, and in-frame insertions, from a NGS read alignment.☆18May 14, 2018Updated 7 years ago
- Tandem Repeats Finder: a program to analyze DNA sequences☆20Jul 30, 2025Updated 7 months ago
- Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data☆33Oct 25, 2013Updated 12 years ago
- Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletion…☆26Apr 25, 2018Updated 7 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Jun 6, 2019Updated 6 years ago
- Grinder is a versatile open-source bioinformatic tool to create simulated omic shotgun and amplicon sequence libraries for all main seque…☆18Aug 30, 2018Updated 7 years ago
- Code to reproduce analyses from the sleuth paper☆16Nov 20, 2018Updated 7 years ago
- Simple R utilities for working with HMMER☆19Oct 3, 2024Updated last year
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Apr 10, 2023Updated 2 years ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Aug 7, 2018Updated 7 years ago
- A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats☆29Dec 15, 2025Updated 2 months ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆29Feb 12, 2026Updated 2 weeks ago
- we collected Gram-stained bacteria images from lower respiratory tract specimens of patients with lung infections in Chinese PLA General…☆12Jan 18, 2024Updated 2 years ago
- Personalized cancer epitope discovery and peptide vaccine prediction pipeline☆30Nov 14, 2017Updated 8 years ago
- Fast and scalable nanopore adaptive sampling☆35Jun 6, 2023Updated 2 years ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Apr 16, 2016Updated 9 years ago
- BigDataScript: Scirpting language for big data☆92Mar 31, 2021Updated 4 years ago
- antimicrobial peptide prediction in R☆33Dec 17, 2024Updated last year
- Code for WHO Global Tuberculosis Report 2023☆14Jan 8, 2024Updated 2 years ago
- ☆14Mar 22, 2018Updated 7 years ago
- mytax is a tool for building custom taxonomies, useful for nucleotide sequence classification☆13Oct 9, 2025Updated 4 months ago
- ABS geographic data structures☆11Dec 6, 2023Updated 2 years ago
- PDBClean helps create a curated ensemble of molecular structures☆16Feb 20, 2026Updated last week
- protein embedding project☆12May 3, 2018Updated 7 years ago
- Computational predictor of protein intrinsic disorder and its functions☆10Dec 4, 2023Updated 2 years ago
- Course materials for the Advanced Courses Working With Pathogen Genomes course run virtually in Asia 10-14 May 2021☆10Jul 5, 2024Updated last year
- KDS software for Kinase Drug Selectivity☆11Jun 8, 2023Updated 2 years ago
- Pipeline for Nanopore sequencing: demultiplexing, variant calling, and quality visualization with error handling.☆11Jan 25, 2026Updated last month
- R Shiny application "Vaccine Designer" aiming for the construction of vaccine sequences based on multi epitope design workflow.☆10Jun 25, 2024Updated last year
- Pairwise SNP distance matrix from a FASTA sequence alignment☆153Dec 31, 2025Updated 2 months ago
- A D library for computational biology and bioinformatics☆49Dec 3, 2021Updated 4 years ago