MonashBioinformaticsPlatform / RNAsik-pipe
RNAsik - more than just a pipeline
☆13Updated 9 months ago
Related projects ⓘ
Alternatives and complementary repositories for RNAsik-pipe
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- BigWig manpulation tools using libBigWig and htslib☆28Updated 3 months ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 5 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- ☆23Updated 4 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆30Updated 5 months ago
- variant discovery and annotation using GATK and Ensembl☆17Updated 11 years ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 4 years ago
- What's The Function of these genes?☆23Updated 7 years ago
- Code to reproduce analyses from the sleuth paper☆16Updated 6 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 3 years ago
- Personal diploid genome creation and coordinate conversion☆21Updated last month
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 10 months ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Updated 4 years ago
- Benchmarks for RNA-seq quantification pipelines☆8Updated 4 years ago
- A Demultiplexing Tool for Illumina Sequencers☆10Updated 8 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 5 months ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- BED QC tool (in the making)☆15Updated 2 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 7 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated 8 months ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 3 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- Color DNA/RNA bases in terminal output☆20Updated 7 years ago
- ☆23Updated 5 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago