MonashBioinformaticsPlatform / RNAsik-pipe
RNAsik - more than just a pipeline
☆13Updated last year
Alternatives and similar repositories for RNAsik-pipe
Users that are interested in RNAsik-pipe are comparing it to the libraries listed below
Sorting:
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- variant discovery and annotation using GATK and Ensembl☆17Updated 11 years ago
- ☆19Updated 8 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆52Updated 7 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Updated 5 years ago
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL.☆14Updated 11 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 7 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 11 months ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- Benchmarks for RNA-seq quantification pipelines☆8Updated 5 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- ☆13Updated 7 years ago
- Northern Arizona SNP Pipeline☆19Updated 6 months ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 9 months ago
- FAST: Fast Analysis of Sequences Toolbox☆31Updated 5 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 11 months ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 6 years ago
- ☆18Updated 9 years ago
- full taxonomer cython repository☆22Updated 5 years ago
- A python script used to annotate genomic intervals.☆18Updated 4 years ago
- A Demultiplexing Tool for Illumina Sequencers☆10Updated 8 years ago
- ☆25Updated 4 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 6 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- Code to reproduce analyses from the sleuth paper☆16Updated 6 years ago