Alternatives and similar repositories for spacepile:

Users that are interested in spacepile are comparing it to the libraries listed below

• 38 / pyd4
  The python binding for D4 format
  ☆16Updated 3 years ago
• natir / biotest
  Generate random test data for bioinformatics
  ☆25Updated 8 months ago
• vsbuffalo / genomap
  A Rust library for storing generic genomic data by sorted chromosome name
  ☆17Updated 4 months ago
• brentp / hileup
  horizontal pileup
  ☆16Updated 2 years ago
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated 11 months ago
• bluenote-1577 / devider
  Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs
  ☆19Updated 3 months ago
• brentp / tnsv
  add true-negative SVs from a population callset to a truth-set.
  ☆15Updated 2 years ago
• ban-m / jtk
  JTK -- a regional diploid genome assembler
  ☆24Updated 4 months ago
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated 3 months ago
• mbhall88 / pafpy
  A lightweight library for working with PAF (Pairwise mApping Format) files
  ☆31Updated 2 years ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆27Updated 7 months ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆61Updated 6 months ago
• Platinum-Pedigree-Consortium / Platinum-Pedigree-Datasets
  ☆17Updated last week
• Magdoll / CoSA
  Coronavirus (SARS-Cov-2) sequencing analysis
  ☆10Updated 3 years ago
• vsbuffalo / hgindex
  Hierarchical binned indexed data store for on-disk genomic data.
  ☆14Updated last month
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆36Updated last year
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆29Updated 2 months ago
• brianli314 / palindrome-finder
  A bioinformatics tool written in Rust to find palindromic sequences in DNA
  ☆34Updated 3 weeks ago
• brentp / pbr
  drunk on perbase pileups and lua expressions
  ☆17Updated last year
• cschin / pgr-tk
  PGR-TK: Pangenome Research Tool Kit
  ☆12Updated this week
• iqbal-lab-org / minos
  Variant call adjudication
  ☆16Updated 8 months ago
• COMBINE-lab / piscem
  Rust wrapper for the next generation (still currently in C++)
  ☆23Updated 2 weeks ago
• varfish-org / mehari
  VEP-like tool for sequence ontology and HGVS annotation of VCF files
  ☆17Updated this week
• mlin / gfabase
  GFA insert into GenomicSQLite
  ☆48Updated 3 years ago
• kcleal / svbench
  Benchmark structural variant calls against a reference set
  ☆17Updated 3 months ago
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆47Updated 2 months ago
• pierrepeterlongo / kmer2sequences
  Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.
  ☆22Updated last year
• Gaius-Augustus / clamsa
  ClaMSA (Classify Multiple Sequence Alignments).
  ☆11Updated 3 months ago
• bsaintjo / slow5-rs
  Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
  ☆10Updated 3 months ago
• PacificBiosciences / actc
  Align subreads to ccs reads
  ☆13Updated last year