brentp / spacepile
convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.
☆14Updated last year
Related projects ⓘ
Alternatives and complementary repositories for spacepile
- Hidden Markov Model based Copy number caller☆20Updated 3 weeks ago
- The python binding for D4 format☆16Updated 3 years ago
- horizontal pileup☆16Updated 2 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated last month
- Generate random test data for bioinformatics☆25Updated 5 months ago
- A FASTA/FASTQ format parser library☆20Updated 8 months ago
- Tumour-only somatic mutation calling using long reads☆24Updated 3 weeks ago
- bedtools-like functionality for interval sets in rust☆44Updated 3 months ago
- drunk on perbase pileups and lua expressions☆17Updated last year
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆16Updated this week
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- PGR-TK: Pangenome Research Tool Kit☆12Updated this week
- Location of public benchmarking; primarily final results☆18Updated 2 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 2 years ago
- Iterate over minimizers of a DNA sequence☆26Updated 4 months ago
- Rust wrapper for the next generation (still currently in C++)☆20Updated this week
- gia: Genomic Interval Arithmetic☆51Updated 3 months ago
- Fast and exact gap-affine partial order alignment☆40Updated 2 weeks ago
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆19Updated 2 months ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆24Updated 2 months ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆22Updated last year
- Quality of life improvements for Bioinformatics in Python.☆27Updated last week
- Benchmark structural variant calls against a reference set☆17Updated 3 weeks ago
- Kmer Analysis of Pileups for Genotyping☆19Updated last week
- Genome browser hub for the T2T genomes and resources☆16Updated 2 weeks ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆27Updated last week
- Wavefront alignment algorithm (WFA) in Golang☆30Updated 3 weeks ago