GitHub template repository for creating new barebones Nextflow pipelines, using the Arcadia-Science/nextflow-template cookiecutter template
☆13Mar 21, 2023Updated 3 years ago
Alternatives and similar repositories for nextflow-template-repository
Users that are interested in nextflow-template-repository are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Nextflow pipeline to identify quality control issues with new sequencing data.☆30Feb 17, 2023Updated 3 years ago
- Template for building a small workflow in Nextflow☆17May 2, 2022Updated 4 years ago
- A provenance library for bioinformatics workflows 🧬 🔀 📝☆14Jun 2, 2026Updated last week
- ☆14Jun 5, 2026Updated last week
- Predict cell cycle phase in a continuum from single-cell RNA-seq data☆14Nov 14, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Scripts to reproduce analyses of tradeSeq paper.☆16Feb 5, 2020Updated 6 years ago
- ☆14May 26, 2026Updated 2 weeks ago
- command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig☆17May 2, 2020Updated 6 years ago
- This package helps wrangle the clinical data in IBD Plexus. IBD Plexus is a data exchange platform designed to accelerate research toward…☆20Apr 17, 2026Updated last month
- Iso-Seq reads simulator for PacBio and ONT full-length isoform sequencing technologies☆17Mar 1, 2022Updated 4 years ago
- ☆23Feb 7, 2022Updated 4 years ago
- Lightweight Python interfaces for reading, writing, and querying genomic regions (BED)☆15May 18, 2026Updated 3 weeks ago
- A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologies☆39May 25, 2023Updated 3 years ago
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- horizontal pileup☆16Nov 11, 2022Updated 3 years ago
- A Nextflow workflow for HLA typing using HLA-HD☆15Jul 3, 2024Updated last year
- Simulate mutations in genomes☆15Jun 15, 2020Updated 5 years ago
- Personal notes about work- and coding-related topics☆20Mar 22, 2023Updated 3 years ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.