ngs-docs / 2023-snakemake-book-draft
A DRAFT, early stage book on snakemake.
☆18Updated last year
Alternatives and similar repositories for 2023-snakemake-book-draft:
Users that are interested in 2023-snakemake-book-draft are comparing it to the libraries listed below
- STAMPS 2018 course☆16Updated 6 years ago
- R interface to 'Gos'☆37Updated last year
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Updated last year
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆14Updated 6 years ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆18Updated 10 months ago
- METAgenomic LONgitudinal Differential Abundance method☆16Updated 5 years ago
- accessory functions for processing microbial community data☆12Updated 2 years ago
- A Toolbox for Manipulating Biological Sequences in R☆22Updated 2 years ago
- Fast alignment-free pangenome creation and exploration☆27Updated 4 years ago
- tidyMicro GitHup Repository☆18Updated 3 years ago
- An Amazing Shiny App☆17Updated 3 years ago
- Scalable relaxed clock phylogenetic dating☆24Updated 10 months ago
- A smorgasbord of R functions for population genomic analyses☆17Updated 2 months ago
- A Tidy Tool for Phylogenetic Tree Data Manipulation☆54Updated 6 months ago
- Metagenomics calibration R package☆18Updated 3 years ago
- gcplyr is an R package that facilitates wrangling and analysis of microbial growth curve data☆30Updated 3 weeks ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated 11 months ago
- An automated pipeline for retrieving orthologous DNA sequences from GenBank in R☆23Updated 6 months ago
- Seamless Integration of BLAST Sequence Searches in R☆31Updated last year
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Updated 3 weeks ago
- Do microbiome analysis with dada2 and phyloseq object☆12Updated 4 months ago
- Snakemake template for building reusable and scalable machine learning pipelines with mikropml☆12Updated last year
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆10Updated 4 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated 8 months ago
- ☆17Updated last year
- ☆26Updated 11 months ago
- Nanopore Real-Time Analysis Tool☆15Updated 5 months ago
- Welcome to the StrainHub Repo - Files and Data - StrainHub Online:☆16Updated 2 years ago
- An R package that provides a base S4 class for comparative methods, incorporating one or more trees and trait data☆18Updated last year
- initial commit☆26Updated 2 years ago