ngs-docs / 2023-snakemake-book-draftLinks
A DRAFT, early stage book on snakemake.
☆22Updated 2 years ago
Alternatives and similar repositories for 2023-snakemake-book-draft
Users that are interested in 2023-snakemake-book-draft are comparing it to the libraries listed below
Sorting:
- Converts 'MultiQC' Reports into Tidy Data Frames☆19Updated last year
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆15Updated 7 years ago
- R interface to 'Gos'☆39Updated 2 years ago
- Racmacs R package for performing antigenic cartography☆24Updated last year
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- METAgenomic LONgitudinal Differential Abundance method☆16Updated 6 years ago
- Do microbiome analysis with dada2 and phyloseq object☆14Updated last year
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)☆21Updated last week
- tidyMicro GitHup Repository☆21Updated 4 years ago
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆10Updated 5 years ago
- STAMPS 2018 course☆15Updated 7 years ago
- ☆16Updated 2 years ago
- A smorgasbord of R functions for performing and teaching population genomic analyses☆19Updated 2 weeks ago
- An R package for displaying binary trees, aiming to represent multiple layers of information on dendrogram leaves.☆15Updated 4 months ago
- Drawing 'dendrogram' using 'ggtree'☆13Updated 2 months ago
- An Amazing Shiny App☆17Updated 4 years ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆22Updated 3 years ago
- ☆28Updated last year
- R Interface to the NCBI SRA metadata☆23Updated 7 years ago
- ☆19Updated last year
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Updated 5 years ago
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Updated last year
- phylogenetic analyses informed by deep mutational scanning data☆15Updated last year
- Analysis tools for PhIP-seq experiments☆12Updated 3 years ago
- Lecture on viral phylodynamics☆11Updated 4 years ago
- A Toolbox for Manipulating Biological Sequences in R☆26Updated 3 months ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 5 months ago
- A rapid phylogeny-based method for accurate community profiling of large-scale metabarcoding datasets☆25Updated 9 months ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated this week