kalekundert / exmemo
Lab notebook for people who like the command line.
☆11Updated 10 months ago
Alternatives and similar repositories for exmemo:
Users that are interested in exmemo are comparing it to the libraries listed below
- A swift, versatile phylogenomic and high-throughput sequencing simulator☆8Updated last year
- Sample an approximate number of reads from a fastq file without reading the entire file☆11Updated 7 years ago
- Color DNA/RNA bases in terminal output☆21Updated 7 years ago
- Misc. utilities☆11Updated 5 years ago
- Simplifies parallel processing of DNA sequencing reads☆9Updated 6 months ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Updated 9 years ago
- Library for visualising genomic features in Python.☆15Updated 7 years ago
- ☆12Updated last year
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated last year
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Updated 5 years ago
- ☆22Updated 4 months ago
- A python script used to annotate genomic intervals.☆18Updated 4 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 2 years ago
- Flexible omics pipeline☆18Updated 9 months ago
- Library for indexing VCF files for random access searches by rsID☆17Updated last year
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Updated 6 years ago
- Index and query k-mer matrices in BGZF☆12Updated 6 years ago
- stageR package☆11Updated 2 years ago
- nimble aligner that will map your reads to the references on a laptop☆12Updated 7 years ago
- Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)☆14Updated 2 weeks ago
- split a FASTA sequence file into shorter sequences☆10Updated 4 years ago
- Add functional variant annotation to MAF file☆11Updated 5 months ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 4 months ago
- CLI to automate Nextflow pipeline testing☆12Updated last month
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 5 years ago
- Nextflow plugin implementation skeleton☆10Updated this week
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Updated 3 years ago
- Automatically source dotenv files into your Nextflow scope☆9Updated 2 weeks ago
- kaamer - protein identification based on amino acid kmers☆12Updated 2 years ago