R package with well defined templates for most common pipelines
☆18Jul 11, 2025Updated 10 months ago
Alternatives and similar repositories for bcbioR
Users that are interested in bcbioR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Workflows for health technology Assessments in R using Discrete EveNts☆12Mar 20, 2026Updated 2 months ago
- rCASC: reproducible Classification Analysis of Single Cell Sequencing Data☆16Apr 15, 2025Updated last year
- TrialMatchAI aims to leverage large language models (LLMs) to streamline patient matching with clinical trials based on unique patient ch…☆19Feb 10, 2026Updated 3 months ago
- UniCell Deconvolve Paper☆10Apr 25, 2023Updated 3 years ago
- ggplot2 geoms to outline groups of data points☆16Nov 24, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Lightweight Python interfaces for reading, writing, and querying genomic regions (BED)☆15Updated this week
- An alignment-free approach to estimating exon-inclusion ratios without a reference transcriptome☆10Jan 25, 2019Updated 7 years ago
- quincunx: an R package to query, download and wrangle PGS Catalog data☆15Aug 14, 2022Updated 3 years ago
- A flexible python program for generating figures from regions of the genome.☆13Apr 6, 2019Updated 7 years ago
- Python Primer Design Library☆14Mar 27, 2026Updated last month
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Apr 16, 2026Updated last month
- My personal website where I write technical articles☆12Mar 21, 2026Updated 2 months ago
- ☆17Jun 6, 2024Updated last year
- Find a curated collection of active publishers, publications, and agencies that pay fair rates for high-quality technical content☆10May 10, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- LEGACY: Git commands to keep a Git repository and Bioconductor SVN in sync☆10Oct 17, 2016Updated 9 years ago
- Specific Transposable Element Aligner (HERV-K)☆16Sep 12, 2019Updated 6 years ago
- Tools to Support the Sheffield Elicitation Framework (SHELF)☆21Apr 2, 2026Updated last month
- Identify differentially expressed k-mers between RNA-Seq datasets☆11Mar 1, 2021Updated 5 years ago
- ☆11May 4, 2021Updated 5 years ago
- A script that allows for the automatisation of multiple maintenance-related tasks on the Spanish Wikipedia.☆16May 3, 2026Updated 2 weeks ago
- Useful bash one-liners for bioinformatics.☆10Jun 26, 2017Updated 8 years ago
- A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries☆12Jan 22, 2020Updated 6 years ago
- Differential ATAC-seq toolkit☆29Dec 21, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A suite for the analysis of CLIP-Seq datasets.☆12Jan 31, 2022Updated 4 years ago
- This repo contains all resources for the Techrity Mentorship Program☆10Mar 3, 2025Updated last year
- A Quarto blog for Bioconductor community☆17Apr 9, 2026Updated last month
- Material for the 2017 May Institute☆13Jun 25, 2017Updated 8 years ago
- nf-neuro is a nextflow neuroimaging library maintained by the SCIL team☆21Updated this week
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Oct 15, 2018Updated 7 years ago
- GFF3 format with miRNA and isomiR information from sequencing data☆17Aug 5, 2019Updated 6 years ago
- Nascent Transcription Processing Pipeline☆22Apr 30, 2026Updated 3 weeks ago
- Shiny apps for NGS etc based on reusable components created using Shiny modules☆90Apr 24, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆17Feb 9, 2020Updated 6 years ago
- ☆14Oct 7, 2019Updated 6 years ago
- Spatial transcriptomics analyses and decoding in R☆24Oct 23, 2025Updated 6 months ago
- ☆18Nov 24, 2024Updated last year
- Workflow management with Nextflow and nf-core☆30Jan 21, 2025Updated last year
- A handbook for all things related to the Mautic Community☆14Apr 30, 2026Updated 3 weeks ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Sep 17, 2019Updated 6 years ago