Alternatives and similar repositories for mulled:

Users that are interested in mulled are comparing it to the libraries listed below

• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆85Updated 3 years ago
• sjackman / docker-bio
  Docker images of bioinformatics software
  ☆21Updated 7 years ago
• BioContainers / specs
  BioContainers specifications
  ☆50Updated 2 years ago
• inutano / cwl-metrics
  Accumulating container resource usage with workflow metadata
  ☆19Updated 4 years ago
• ewels / clusterflow
  A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
  ☆97Updated last year
• nextflow-io / cwl2nxf
  Import a CWL workflow specification to Nextflow script (experimental)
  ☆27Updated 6 years ago
• biobuilds / biobuilds
  Curated collection of open-source bioinformatics tools
  ☆28Updated 6 years ago
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆42Updated last year
• usegalaxy-eu / usegalaxy-eu-tools
  List of tools included in https://usegalaxy.eu
  ☆26Updated this week
• rabix / rabix
  [Historical] Reproducible Analyses for Bioinformatics
  ☆106Updated 6 years ago
• arq5x / grabix
  a wee tool for random access into BGZF files.
  ☆84Updated 6 years ago
• enasequence / cramtools
  CRAM format specification and java API for read data.
  ☆58Updated 6 years ago
• percyfal / snakemakelib
  Snakemake library for bioinformatics programs, with a focus on next-generation sequencing
  ☆22Updated 9 years ago
• hexylena / argparse2tool
  transparently build CWL and Galaxy XML tool definitions for any script that uses argparse
  ☆27Updated 4 months ago
• lh3 / fermi-lite
  Standalone C library for assembling Illumina short reads in small regions
  ☆72Updated 2 years ago
• common-workflow-library / legacy
  Deprecated
  ☆100Updated 5 years ago
• BD2KGenomics / protect
  ☆29Updated 3 years ago
• galaxyproject / planemo
  Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training m…
  ☆91Updated this week
• TGAC / earlham-galaxytools
  Galaxy tools and workflows developed at the Earlham Institute
  ☆14Updated last week
• brentp / bigly
  a pileup library that embraces the huge
  ☆42Updated 4 years ago
• bioboxes / rfc
  Request for comments on interchangeable bioinformatics containers
  ☆40Updated 5 years ago
• percyfal / snakemake-rules
  Library of snakemake rules.
  ☆12Updated 6 years ago
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆71Updated last week
• common-workflow-lab / wdl2cwl
  [Experimental] Workflow Definition Language (WDL) to CWL
  ☆28Updated 3 years ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 5 years ago
• galaxyproject / cargo-port
  cache packages permanently
  ☆13Updated 8 months ago
• galaxyproject / gxadmin
  Handy command line utility for Galaxy administrators
  ☆23Updated last week
• Ensembl / ensembl-variation
  The Ensembl Variation Perl API and SQL schema
  ☆28Updated last week
• ohsu-comp-bio / cwl-tes
  cwl-tes submits your tasks to a TES server. Task submission is parallelized when possible.
  ☆18Updated 2 years ago
• LANL-Bioinformatics / EDGE
  EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.
  ☆73Updated last week