BioContainers / mulledLinks
Mulled - Automatized Containerized Software Repository
☆66Updated last year
Alternatives and similar repositories for mulled
Users that are interested in mulled are comparing it to the libraries listed below
Sorting:
- [Historical] Reproducible Analyses for Bioinformatics☆106Updated 6 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- transparently build CWL and Galaxy XML tool definitions for any script that uses argparse☆27Updated 7 months ago
- CRAM format specification and java API for read data.☆60Updated 6 years ago
- a wee tool for random access into BGZF files.☆84Updated 7 years ago
- a simple read-only sequence database, designed for short reads☆66Updated last year
- ☆38Updated 3 months ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 3 months ago
- Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines☆65Updated 5 years ago
- Docker images of bioinformatics software☆21Updated 7 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion☆21Updated 4 years ago
- A cookiecutter template for Snakemake workflows☆59Updated 3 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- Deprecated☆100Updated 5 years ago
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Updated 9 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- Genomics Research Container Architecture☆48Updated 5 years ago
- BioContainers specifications☆51Updated 2 years ago
- cache packages permanently☆14Updated 11 months ago
- Dockerfiles to build Biopython instances☆28Updated 8 years ago
- A novel pipeline framework to accelerate bioinformatics analysis☆29Updated 2 years ago
- Galaxy Admin Training☆61Updated 6 months ago
- Basic, no assumptions, multi-pileup☆24Updated 11 years ago
- Accumulating container resource usage with workflow metadata☆19Updated 4 years ago
- ☆62Updated 8 years ago
- Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training m…☆93Updated last week
- Request for comments on interchangeable bioinformatics containers☆40Updated 5 years ago