BioContainers / mulled

Related projects ⓘ

Alternatives and complementary repositories for mulled

• galaxyproject / planemo
  Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training m…
  ☆90Updated 3 weeks ago
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆85Updated 3 years ago
• ewels / clusterflow
  A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
  ☆97Updated last year
• inutano / cwl-metrics
  Accumulating container resource usage with workflow metadata
  ☆19Updated 3 years ago
• BioContainers / specs
  BioContainers specifications
  ☆49Updated last year
• arq5x / grabix
  a wee tool for random access into BGZF files.
  ☆84Updated 6 years ago
• bio-tools / ToolDog
  Generating tool descriptors from bio.tools
  ☆9Updated 6 years ago
• hexylena / argparse2tool
  transparently build CWL and Galaxy XML tool definitions for any script that uses argparse
  ☆27Updated 2 weeks ago
• rabix / rabix
  [Historical] Reproducible Analyses for Bioinformatics
  ☆106Updated 5 years ago
• sjackman / docker-bio
  Docker images of bioinformatics software
  ☆21Updated 7 years ago
• percyfal / snakemake-rules
  Library of snakemake rules.
  ☆12Updated 6 years ago
• percyfal / snakemakelib
  Snakemake library for bioinformatics programs, with a focus on next-generation sequencing
  ☆22Updated 8 years ago
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆69Updated this week
• galaxyproject / gxadmin
  Handy command line utility for Galaxy administrators
  ☆23Updated this week
• refgenie / refgenie
  Reference genome resource manager
  ☆74Updated 11 months ago
• LANL-Bioinformatics / EDGE
  EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.
  ☆73Updated last month
• common-workflow-library / legacy
  Deprecated
  ☆100Updated 5 years ago
• ga4gh / task-execution-server
  ☆11Updated 8 years ago
• bioinform / varsim
  VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
  ☆80Updated last month
• arq5x / cyvcf
  A fast Python library for VCF files leveraging Cython for speed.
  ☆52Updated 6 years ago
• ga4gh / tool-registry-service-schemas
  APIs for discovering genomics tools, their metadata and their containers
  ☆30Updated 3 weeks ago
• nextflow-io / cwl2nxf
  Import a CWL workflow specification to Nextflow script (experimental)
  ☆27Updated 6 years ago
• MelbourneGenomics / cpipe
  The open source version of the Melbourne Genomics Health Alliance Exome Sequencing Pipeline
  ☆33Updated 6 years ago
• galaxyproject / bioblend
  A Python library for interacting with the Galaxy API
  ☆85Updated 2 weeks ago
• splatlab / squeakr
  Squeakr: An Exact and Approximate k -mer Counting System
  ☆85Updated 9 months ago
• Ensembl / ensembl-variation
  The Ensembl Variation Perl API and SQL schema
  ☆27Updated this week
• usegalaxy-eu / usegalaxy-eu-tools
  List of tools included in https://usegalaxy.eu
  ☆26Updated this week
• dib-lab / screed
  a simple read-only sequence database, designed for short reads
  ☆64Updated 9 months ago
• biobuilds / biobuilds
  Curated collection of open-source bioinformatics tools
  ☆28Updated 5 years ago
• galaxyproject / admin-training
  Galaxy Admin Training
  ☆60Updated 11 months ago