eWaterCycle / setup-apptainerLinks
GitHub action to setup apptainer
☆15Updated 7 months ago
Alternatives and similar repositories for setup-apptainer
Users that are interested in setup-apptainer are comparing it to the libraries listed below
Sorting:
- Build and deploy Singularity containers to GitHub releases, and pull with the singularity-hpc client☆17Updated last year
- GitHub action to setup singularity☆17Updated 2 years ago
- An example GitHub Action (CI) to build a Singularity container☆70Updated 2 years ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Updated 3 months ago
- Misc. utilities☆11Updated 6 years ago
- A Jupyter wrapper for the igv.js library (representation of genomic data)☆26Updated 4 years ago
- A Python class for scheduling SLURM jobs☆58Updated 9 months ago
- Nextflow plugin implementation skeleton☆10Updated 3 months ago
- HPC Python lesson materials☆61Updated 2 years ago
- cy3sbml: SBML for Cytoscape 3☆14Updated this week
- Python utilities for CWL☆39Updated last week
- Tabular seff☆84Updated last month
- A Snakemake executor plugin for submitting jobs to a SLURM cluster☆40Updated 2 weeks ago
- A tool for creating resource prediction models for scientific workflows☆13Updated last year
- Command-line utilities to manage JOSS submissions. May one day be a sentient being.☆28Updated last year
- The R package manager that is blazingly fast ⚡. Powered by mamba.☆75Updated 2 years ago
- a full day lesson material to teach the basics of using a HPC cluster to novices☆34Updated 6 years ago
- Simple installer for conda (and conda-likes)☆17Updated last week
- Port Forwarding Utility☆52Updated last year
- ☆66Updated 11 months ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- A Github action for running a Snakemake workflow☆59Updated last month
- definition files and wrapper scripts used by NIH HPC staff to install user-facing apps on the Biowulf cluster☆30Updated 4 years ago
- Build and maintain multiple custom conda environments all in one place.☆39Updated 8 months ago
- Lint Nextflow pipelines in Python.☆11Updated 6 months ago
- The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…☆26Updated 3 weeks ago
- The CWL v1.0 - v1.2 user guide☆43Updated 9 months ago
- Is a mkdocs plugin to make reproducible documentation with quarto☆18Updated 3 months ago
- submit jobs to slurm with quick-and-dirty python☆94Updated 2 years ago
- Connect to a LSF main node directly or trough a ssh jump node, launch a jupyter notebook via bsub and open automatically a tunnel. The n…☆20Updated 3 years ago