Alternatives and similar repositories for bsub

Users that are interested in bsub are comparing it to the libraries listed below

• lucapinello / bsub_jupyter
  Connect to a LSF main node directly or trough a ssh jump node, launch a jupyter notebook via bsub and open automatically a tunnel. The n…
  ☆20Updated 4 years ago
• jupyter-widgets-contrib / ipyigv
  A Jupyter wrapper for the igv.js library (representation of genomic data)
  ☆26Updated 4 years ago
• sseemayer / qstat-pretty
  Pretty GridEngine, Torque and Platform LSF status tables
  ☆33Updated 9 years ago
• pygridtools / drmaa-python
  Python wrapper around the C DRMAA library.
  ☆108Updated 6 years ago
• goerz / clusterjob
  Manage traditional HPC cluster workflows in Python
  ☆14Updated 7 years ago
• Snakemake-Profiles / pbs-torque
  ☆17Updated 2 years ago
• brentp / slurmpy
  submit jobs to slurm with quick-and-dirty python
  ☆95Updated 2 years ago
• conda-incubator / ensureconda
  Simple installer for conda (and conda-likes)
  ☆17Updated 2 weeks ago
• acorg / slurm-pipeline
  A Python class for scheduling SLURM jobs
  ☆61Updated last year
• endrebak / poranges
  pyranges/bioframe for polars
  ☆18Updated 2 years ago
• schneiderfelipe / doi
  📝 Easily convert Digital Object Identifier (DOI) and Uniform Resource Locator (URL) to BibTeX and DOI to plain text.
  ☆38Updated 2 years ago
• beardymcjohnface / Nektool
  Cookiecutter profile for making a NextFlow-based bioinformatics tool
  ☆17Updated last year
• clicumu / doepipeline
  A python package for optimizing processing pipelines using statistical design of experiments (DoE).
  ☆24Updated 3 years ago
• phiweger / nanotext
  Proteins as words, genomes as documents.
  ☆19Updated 5 years ago
• dpryan79 / Misc
  Misc. utilities
  ☆11Updated 6 years ago
• alubbock / microbench
  Benchmarking and metadata tracking for Python. Extensible, with distributed/cluster support.
  ☆20Updated 3 weeks ago
• adrianveres / polo
  Python Optimal Leaf Ordering for Hierarchical Clustering
  ☆21Updated 8 years ago
• hpc-carpentry / hpc-python
  HPC Python lesson materials
  ☆61Updated 2 years ago
• Edinburgh-Genome-Foundry / genome_collector
  Easily download genomes and build BLAST/Bowtie indexes in Python
  ☆22Updated 3 years ago
• NIH-HPC / python-in-hpc
  Materials for a Python in HPC class
  ☆33Updated 5 years ago
• ben-albrecht / environmentmodules
  Python module for Environment Modules
  ☆17Updated 8 years ago
• snakemake / snakemake-executor-plugin-slurm
  A Snakemake executor plugin for submitting jobs to a SLURM cluster
  ☆42Updated last week
• tanghaibao / pybind11_log
  A bridge from C++ to Python logging
  ☆12Updated 11 months ago
• troycomi / snakemake-training
  Increasingly complete example bioinformatics workflow
  ☆18Updated 3 years ago
• pycogent / pycogent
  PyCogent: Official repository for software and unit tests
  ☆91Updated 4 years ago
• conda-incubator / conda-docker
  Create minimal docker images from conda environments
  ☆60Updated 2 years ago
• eWaterCycle / setup-apptainer
  GitHub action to setup apptainer
  ☆16Updated 10 months ago
• roryk / ipython-cluster-helper
  Tool to easily start up an IPython cluster on different schedulers.
  ☆147Updated 5 years ago
• gawbul / docker-sge
  Dockerfile to build a container with SGE installed
  ☆24Updated 9 years ago
• conda-incubator / conda-env-builder
  Build and maintain multiple custom conda environments all in one place.
  ☆39Updated 11 months ago