brentp / bsub
python wrapper to submit jobs to bsub (and later qsub)
☆44Updated 3 years ago
Alternatives and similar repositories for bsub:
Users that are interested in bsub are comparing it to the libraries listed below
- Connect to a LSF main node directly or trough a ssh jump node, launch a jupyter notebook via bsub and open automatically a tunnel. The n…☆20Updated 3 years ago
- Manage traditional HPC cluster workflows in Python☆13Updated 6 years ago
- Simple installer for conda (and conda-likes)☆15Updated 11 months ago
- A conda-smithy repository for ctng-compiler-activation.☆13Updated 2 months ago
- Python wrapper around the C DRMAA library.☆108Updated 5 years ago
- PyCogent: Official repository for software and unit tests☆91Updated 3 years ago
- Pretty GridEngine, Torque and Platform LSF status tables☆31Updated 8 years ago
- Python based pipeline management software for clusters (but checkout toil: https://github.com/BD2KGenomics/toil, its successor)☆24Updated 7 years ago
- A Jupyter wrapper for the igv.js library (representation of genomic data)☆26Updated 3 years ago
- CUDASW++4.0: Ultra-fast GPU-based Smith-Waterman Protein Sequence Database Search☆36Updated 2 months ago
- Easily map Python functions onto a cluster using a DRMAA-compatible grid engine like Sun Grid Engine (SGE).☆84Updated last year
- Misc. utilities☆11Updated 5 years ago
- Dockerfile to build a container with SGE installed☆24Updated 8 years ago
- Proteins as words, genomes as documents.☆20Updated 4 years ago
- bioinformatics visualization tools with pyviz/bokeh☆19Updated last year
- An extension to the MDAnalysis library providing support for dealing with structural ensembles. There is currently support for calculatin…☆14Updated 6 years ago
- A Snakemake executor plugin for submitting jobs to a SLURM cluster☆22Updated this week
- Python module for Environment Modules☆17Updated 7 years ago
- ☆16Updated last year
- ☆13Updated last week
- PDBe Programming Interfaces information☆14Updated 6 years ago
- 🏖️ The EGF Collection of Useful Bio Apps - Web demos of EGF software☆20Updated 2 years ago
- Easily download genomes and build BLAST/Bowtie indexes in Python☆21Updated 2 years ago
- Hacking structural biology with Python and pandas☆21Updated 9 years ago
- C++ implementation of the Diffusion Map, with Python bindings☆10Updated 7 years ago
- Parsing MHC nomenclature in the wild☆16Updated 3 months ago
- A unified array job submitter for LSF, SGE/UGE and Slurm☆32Updated 3 months ago
- Tool to easily start up an IPython cluster on different schedulers.☆147Updated 4 years ago