Genomic interval operations on Pandas DataFrames
☆191Mar 2, 2026Updated last month
Alternatives and similar repositories for bioframe
Users that are interested in bioframe are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Extract 3D contacts (.pairs) from sequencing alignments☆129Feb 3, 2026Updated 2 months ago
- A cool place to store your Hi-C☆234Updated this week
- Python bindings to UCSC BigWig and BigBed library☆36Updated this week
- Performant Pythonic GenomicRanges☆494Jan 27, 2026Updated 2 months ago
- The tools for your .cool's☆163Mar 19, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A library to analyse the structure of 1d loops and simulate loop extrusion by loop extruding factors.☆11Feb 10, 2025Updated last year
- A modular Hi-C mapping pipeline☆102Dec 5, 2024Updated last year
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆81Oct 31, 2024Updated last year
- Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer☆64Mar 30, 2026Updated last week
- Oxbow makes genomic data ready for high-performance analytics.☆153Mar 21, 2026Updated 3 weeks ago
- a minimal, scriptable genome browser for python☆53Dec 20, 2024Updated last year
- snakemake pipeline for Hi-C post-processing☆22Jun 27, 2024Updated last year
- Lightweight Python interfaces for reading, writing, and querying genomic regions (BED)☆14Mar 27, 2026Updated 2 weeks ago
- A high-performance BigWig and BigBed library in Rust☆113Feb 13, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆39Apr 2, 2026Updated last week
- Blazing fast toolkit to work with .hic and .cool files☆44Updated this week
- A visual exploration and hypothesis testing tool for 3D genomics☆13Apr 12, 2024Updated last year
- A utility script to manage local docker instances of HiGlass☆24Jul 6, 2023Updated 2 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆870Jul 10, 2024Updated last year
- pyranges/bioframe for polars☆18Jul 20, 2023Updated 2 years ago
- Jupyter notebook based genomic data visualization toolkit.☆254Dec 4, 2025Updated 4 months ago
- Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps☆70Dec 16, 2022Updated 3 years ago
- genes and genomes at your fingertips☆410Mar 5, 2026Updated last month
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Cooler demo using a Jupyter notebook Binder☆18Sep 24, 2020Updated 5 years ago
- a python package for fast random access to sequences from plain and gzipped FASTA/Q files☆291Jan 16, 2026Updated 2 months ago
- Blazing-Fast Bioinformatic Operations on Python DataFrames☆154Updated this week
- A declarative interactive genomics visualization library for Python.☆243Nov 24, 2025Updated 4 months ago
- A python extension for quick access to bigWig and bigBed files☆242Jan 14, 2026Updated 2 months ago
- Bam to Pandas DataFrame, quickly☆13May 10, 2025Updated 11 months ago
- Red-C data processing☆15Apr 18, 2023Updated 2 years ago
- Chromosome polymer simulations and in silico capture experiments☆56Feb 18, 2026Updated last month
- Fast alignment and preprocessing of chromatin profiles☆217Mar 20, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A Rust library and command line tool for working with genomic ranges and their data.☆100May 29, 2024Updated last year
- Slides and demos from our SciPyConf 2019 talk☆13Sep 28, 2021Updated 4 years ago
- Per-base per-nucleotide depth analysis☆149Mar 16, 2026Updated 3 weeks ago
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆14Dec 22, 2025Updated 3 months ago
- muon is a multimodal omics Python framework☆266Mar 16, 2026Updated 3 weeks ago
- HiGlass track for displaying arcs between disconnected regions☆10Dec 13, 2022Updated 3 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆101Mar 31, 2026Updated last week