Alternatives and similar repositories for conda-env-builder

Users that are interested in conda-env-builder are comparing it to the libraries listed below

• multimeric / TidyMultiqc
  Converts 'MultiQC' Reports into Tidy Data Frames
  ☆19Updated last year
• beardymcjohnface / Nektool
  Cookiecutter profile for making a NextFlow-based bioinformatics tool
  ☆17Updated last year
• ctb / 2019-snakemake-ucdavis
  Intro to workflows for efficient automated data analysis, using snakemake.
  ☆32Updated 6 years ago
• fulcrumgenomics / pybedlite
  Lightweight Python interfaces for reading, writing, and querying genomic regions (BED)
  ☆14Updated last month
• seqeralabs / seqerakit
  Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)
  ☆33Updated last month
• snakemake / snakemake-github-action
  A Github action for running a Snakemake workflow
  ☆62Updated last month
• snakemake / snakedeploy
  deploy a snakemake pipeline directly from version control (under development)
  ☆24Updated last week
• snakemake / snakemake-workflow-catalog
  A statically generated catalog of available Snakemake workflows
  ☆36Updated last week
• dcjones / isolator
  Rapid and robust analysis of RNA-Seq experiments.
  ☆32Updated 9 years ago
• nf-core / fastquorum
  Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)
  ☆27Updated last month
• bionitio-team / bionitio-python
  Demonstrating best practices for bioinformatics command line tools
  ☆25Updated 5 years ago
• brentp / tiwih
  simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.
  ☆44Updated 2 years ago
• UMCUGenetics / NextflowModules
  UMCU Genetics Nextflow modules
  ☆29Updated last year
• independentdatalab / tf-aws-env-nf
  Terraform template to create AWS resources to execute jobs using nextflow
  ☆22Updated 2 years ago
• telatin / covtobed
  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file
  ☆44Updated 2 months ago
• price0416 / DEvis
  DEvis: an R package for aggregation and visualization of differential expression data
  ☆20Updated 5 years ago
• seqeralabs / tower-cli
  Nextflow Tower CLI tool
  ☆51Updated this week
• gogetdata / ggd-cli
  The command-line interface to GGD
  ☆43Updated 3 years ago
• nf-core / tower-action
  GitHub Action to launch a workflow using Nextflow Tower.
  ☆12Updated 2 years ago
• qbic-pipelines / rnadeseq
  Differential gene expression analysis and pathway analysis of RNAseq data
  ☆32Updated 6 months ago
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆44Updated 2 years ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆31Updated 4 months ago
• nextflow-io / vscode-language-nextflow
  Nextflow language support for Visual Studio Editor
  ☆37Updated 2 weeks ago
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆30Updated last year
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆53Updated last year
• vsbuffalo / snakemake-tutorial
  Snakemake tutorial materials
  ☆19Updated 5 years ago
• alevar / ORFanage
  Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…
  ☆42Updated 3 weeks ago
• dancooke / starfish
  Intersect multiple VCF files with haplotype awareness
  ☆26Updated 4 years ago
• brentp / seqcover
  seqcover allows users to view coverage for hundreds of genes and dozens of samples
  ☆52Updated 4 years ago
• SamStudio8 / majora2
  Malleable All-seeing Journal Of Research Artifacts
  ☆35Updated 2 years ago