stephaniehicks / methylCCLinks
R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms
☆18Updated 2 years ago
Alternatives and similar repositories for methylCC
Users that are interested in methylCC are comparing it to the libraries listed below
Sorting:
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Updated 4 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated 2 years ago
- Explore the cancer relevance of your gene list☆52Updated 2 weeks ago
- Code for creating cell-type-specific regulatory element annotation files☆18Updated last year
- Pairwise Hierarchical Model☆20Updated 3 years ago
- ☆17Updated last year
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆18Updated last week
- Repository for signature genes from Immune Cell Atlas☆18Updated 6 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- Gene-level general linear mixed model☆23Updated this week
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆24Updated 2 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆11Updated 6 years ago
- R package for benchmarking single cell analysis methods☆32Updated 2 years ago
- A set of tools for accurate quantitation of single-cell allele-specific expression☆12Updated 2 years ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 4 years ago
- countsimQC - Compare characteristic features of count data sets☆29Updated 2 months ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 8 years ago
- Molecular Signatures Database (MSigDB) in a data frame☆16Updated 6 years ago
- Code for EpiMap data browser☆14Updated last year
- SCASA: Single cell transcript quantification tool☆21Updated last year
- An R package for multi-dimensional pathway enrichment analysis☆16Updated 5 months ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Updated 2 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆32Updated 4 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- A Julia package for extracting mutation signatures using topic models☆19Updated 3 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- Trans-association between HLA and TCR-CDR3☆18Updated 2 years ago