seandavi / ngCGHLinks
Tools for producing pseudo-cgh of next-generation sequencing data
☆18Updated 9 years ago
Alternatives and similar repositories for ngCGH
Users that are interested in ngCGH are comparing it to the libraries listed below
Sorting:
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- vcf file manipulation☆22Updated 10 years ago
- ☆11Updated 7 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Haplotype-based somatic genome simulator☆10Updated 8 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated this week
- ☆29Updated 4 years ago
- ☆36Updated 5 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- sort genomic data☆36Updated 5 years ago
- High-definition reconstruction of clonal composition from next-generation sequencing data☆41Updated 9 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- extract SV signal from a BAM☆11Updated 7 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- ☆13Updated 8 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 6 months ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- A tool for evaluating RNA seq mapping☆22Updated 6 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Updated 9 years ago
- Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach☆36Updated 14 years ago