Tools for producing pseudo-cgh of next-generation sequencing data
☆18Sep 5, 2016Updated 9 years ago
Alternatives and similar repositories for ngCGH
Users that are interested in ngCGH are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- vcf file manipulation☆22Jul 9, 2015Updated 10 years ago
- The open source version of the Melbourne Genomics Health Alliance Exome Sequencing Pipeline☆33Jan 20, 2018Updated 8 years ago
- Contig Ploidy and Allele Dosage Estimation☆11Oct 30, 2015Updated 10 years ago
- Polygenic score calculation from VCF in Nim.☆15Nov 22, 2020Updated 5 years ago
- Reference-based compression of SRA data☆40Mar 26, 2013Updated 13 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆11Jul 13, 2018Updated 7 years ago
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated 2 months ago
- normalize, left-align, trim, validate and clean VCF files☆20Jul 22, 2015Updated 10 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Apr 8, 2016Updated 10 years ago
- FermiKit small variant calls for public SGDP samples☆17Sep 22, 2016Updated 9 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆19Mar 5, 2019Updated 7 years ago
- ☆13Jun 21, 2017Updated 9 years ago
- Stupid Simple Structural Variant View☆25Nov 21, 2016Updated 9 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- probability of mendelian error in trios.☆11Jan 27, 2016Updated 10 years ago
- example ruffus pipeline☆18Sep 30, 2011Updated 14 years ago
- Simplify snpEff annotations for interesting cases☆22Feb 18, 2019Updated 7 years ago
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- Prioritize structural variants based on CADD scores☆29May 7, 2020Updated 6 years ago
- Write-once-read-many table for large datasets.☆27Oct 5, 2023Updated 2 years ago
- Predict mutated T-cell epitopes from sequencing data☆30May 18, 2026Updated last month
- sort genomic data☆36Nov 7, 2025Updated 8 months ago
- FinalVersions☆17Apr 3, 2017Updated 9 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Interact with CSV files as Python objects☆20Nov 5, 2013Updated 12 years ago
- Sweep-line algorithm for genomic features. Detect overlaps on large files w/ minimal memory.☆10Sep 13, 2011Updated 14 years ago
- Software for Nanopore Analysis☆10Mar 14, 2018Updated 8 years ago
- The Exome Coverage and Identification Report displays the coverage of every target region in your capture design. It also displays regio…☆14Apr 22, 2015Updated 11 years ago
- Python script for calling SNPs, MNPs, and indels in mitochondrial DNA.☆10Apr 19, 2016Updated 10 years ago
- ☆39Jun 3, 2026Updated last month
- Pipeline for poreathon☆14Dec 17, 2014Updated 11 years ago
- Variant Caller Analysis Dashboard and Data Management System☆36Feb 8, 2016Updated 10 years ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆16Sep 11, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- An online adaptation of Dave Seah's Printable Emergent Task Timer☆28Nov 29, 2012Updated 13 years ago
- Web-based database system for flow cell management (incl. REST API)☆16Mar 7, 2024Updated 2 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆31Feb 20, 2021Updated 5 years ago
- A Flutter app that manages a list on contacts on MongoDB Cloud Atlas☆19Oct 6, 2020Updated 5 years ago
- Parse samtools pileup file to get how many bases and what kind of bases are called☆14Apr 30, 2024Updated 2 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Sep 16, 2021Updated 4 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Oct 31, 2019Updated 6 years ago