seandavi / ngCGH
Tools for producing pseudo-cgh of next-generation sequencing data
☆17Updated 8 years ago
Alternatives and similar repositories for ngCGH:
Users that are interested in ngCGH are comparing it to the libraries listed below
- ☆11Updated 6 years ago
- Haplotype-based somatic genome simulator☆10Updated 7 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- ☆37Updated 4 years ago
- vcf file manipulation☆21Updated 9 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 8 years ago
- ☆21Updated last year
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆17Updated 6 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Gene lists related to cancer immunotherapy☆13Updated 6 months ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 6 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- Prioritize structural variants based on CADD scores☆29Updated 4 years ago
- Allele frequency filter app☆14Updated 2 years ago
- An algorithm for clonal tree reconstruction from multi-sample cancer sequencing data☆14Updated 6 years ago
- Python package and routines for merging VCF files☆29Updated 3 years ago
- ☆12Updated 3 years ago
- Hemang Parikh☆11Updated 9 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- Simplify snpEff annotations for interesting cases☆21Updated 6 years ago
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- Structural variation and indel detection using rolling local string graph assembly☆9Updated 8 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆27Updated 2 years ago
- A tool for evaluating RNA seq mapping☆22Updated 5 years ago