morrislab / TrackSigLinks
A framework to infer mutational signatures in cancer over time
☆53Updated 5 years ago
Alternatives and similar repositories for TrackSig
Users that are interested in TrackSig are comparing it to the libraries listed below
Sorting:
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 2 months ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 5 months ago
- MutSig2CV from Lawrence et al. 2014☆31Updated 4 years ago
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- Main repository for Drews et al. (Nature, 2022)☆41Updated last year
- ☆40Updated 7 years ago
- ☆38Updated 5 years ago
- ☆34Updated 5 years ago
- ☆14Updated last year
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 9 months ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- An R package for predicting HR deficiency from mutation contexts☆28Updated 3 months ago
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆41Updated last month
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- ☆34Updated 5 years ago
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer☆18Updated last week
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- Single-CELL rna-seq analysis software☆39Updated 7 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 2 years ago
- R package for applying Gamma-Poisson regression to identify statistical enrichment or depletion of somatic mutations in regions after cor…☆30Updated 2 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆29Updated 2 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- <<------ Use SnapATAC!!☆25Updated 6 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago