morrislab / TrackSig
A framework to infer mutational signatures in cancer over time
☆53Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for TrackSig
- Main repository for Drews et al. (Nature, 2022)☆38Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated last month
- MutSig2CV from Lawrence et al. 2014☆30Updated 4 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆42Updated 3 years ago
- R package for applying Gamma-Poisson regression to identify statistical enrichment or depletion of somatic mutations in regions after cor…☆27Updated last year
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer☆17Updated 2 weeks ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated last year
- ☆33Updated 5 years ago
- ☆37Updated 4 years ago
- Flexible Bayesian inference of mutational signatures☆33Updated last year
- DriverPower☆26Updated 5 months ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆28Updated 5 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆16Updated 4 years ago
- Integrative pipeline for profiling DNA copy number and inferring tumor phylogeny☆20Updated 4 years ago
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 3 years ago
- Robust Allele Specific Quantification and quality controL☆37Updated 2 years ago
- ☆40Updated 6 years ago
- hands-on for NGS/SNParray CNV call trainning☆17Updated 2 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 3 years ago
- ☆14Updated last year
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆37Updated last week
- Figure depicting the breadth of multimodal scRNA-seq technologies☆15Updated 5 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆29Updated last year
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆29Updated 2 years ago
- An R package to plot maps of clone distributions in somatic evolution☆15Updated 10 months ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 3 months ago
- An R package for predicting HR deficiency from mutation contexts☆27Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 3 months ago
- Extracting disease-specific genomic coordinates from GWAS catalog☆19Updated 4 years ago
- processes GoT amplicon data and generates a table of metrics☆26Updated 2 years ago