Repository of the pipeline of computational methods for logical modelling of biological networks that are deregulated in diseases, developed by the Computational Systems Biology of Cancer group in Bioinformatics Laboratory of Institut Curie (Paris)
☆10Mar 14, 2026Updated 2 months ago
Alternatives and similar repositories for Logical_modelling_pipeline
Users that are interested in Logical_modelling_pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repository of "Personalization of Logical Models With Multi-Omics Data Allows Clinical Stratification of Patients" paper☆11Dec 2, 2025Updated 5 months ago
- "Independent Component Analysis of BIg Omics Data"☆13Nov 3, 2022Updated 3 years ago
- CANAlization: Control & Redundancy in Boolean Networks☆26May 4, 2026Updated 3 weeks ago
- Representation of Module Activity☆10May 31, 2017Updated 8 years ago
- A web tool for exploring large maps of molecular interactions☆11Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A collection of 280+ Boolean networks from various sources useful for benchmarking or testing.☆22May 18, 2026Updated last week
- Compares two images using Siamese Network (machine learning) trained from a Pytorch Implementation☆10Jul 27, 2021Updated 4 years ago
- DYNamics Agnostic Network MOdels☆18Jul 3, 2018Updated 7 years ago
- Multiscale simulation of multi-cellular system☆11Updated this week
- ☆14Oct 9, 2025Updated 7 months ago
- toolkit for the manipulation and analysis of Logical Qualitative Models of biological regulatory networks☆20Apr 22, 2026Updated last month
- Multiscale simulation of multi-cellular system☆28Jul 31, 2020Updated 5 years ago
- Static analyzer for dynamics of Automata Networks☆12Feb 3, 2021Updated 5 years ago
- SyncToy, but brought up-to-date with a Fluent design and a nod to the past.☆12May 14, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data.☆13Nov 24, 2025Updated 6 months ago
- Trefle is a scikit-learn compatible estimator implementing the FuzzyCoCo algorithm that uses a cooperative coevolution algorithm to find …☆13Jan 12, 2019Updated 7 years ago
- R package for extracting mutation signatures from a list of somatic mutations☆37Aug 9, 2019Updated 6 years ago
- Simplex space operations for compositional data implemented in Python.☆13Feb 17, 2022Updated 4 years ago
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)☆11Mar 2, 2023Updated 3 years ago
- Main repository for Drews et al. (Nature, 2022)☆43Aug 14, 2023Updated 2 years ago
- The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks☆27May 19, 2026Updated last week
- Single cell pipelines☆16Dec 16, 2024Updated last year
- 45+ production-ready tutorials on data science, MLOps, and AI tools. All code is executable and adaptable for real projects.☆24May 16, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Simple distributed data manipulation and processing routines in Julia☆16Mar 22, 2022Updated 4 years ago
- Boolean Network Modeling☆41Jan 31, 2020Updated 6 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Apr 16, 2021Updated 5 years ago
- Introduction to R for Humanitarian Data Science☆20Jan 25, 2017Updated 9 years ago
- ☆12Feb 12, 2018Updated 8 years ago
- ActiveDriverDB☆12May 1, 2023Updated 3 years ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- Bioconductor components for general cancer genomics☆11Feb 5, 2023Updated 3 years ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆35Mar 12, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Add functional variant annotation to MAF file☆11Nov 20, 2024Updated last year
- Tutorial for running Mendelian Randomization analysis using R☆36Apr 29, 2024Updated 2 years ago
- PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks☆33Updated this week
- An alignment-free approach to estimating exon-inclusion ratios without a reference transcriptome☆10Jan 25, 2019Updated 7 years ago
- Pan-cancer quantification of neoantigen-mediated immunoediting in cancer evolution☆14May 4, 2022Updated 4 years ago
- ☆32Dec 6, 2017Updated 8 years ago
- This page hosts NeKo, a python package that allow the user to automatically build gene regulatory networks from any databases.☆19May 22, 2026Updated last week