Repository of the pipeline of computational methods for logical modelling of biological networks that are deregulated in diseases, developed by the Computational Systems Biology of Cancer group in Bioinformatics Laboratory of Institut Curie (Paris)
☆10Mar 14, 2026Updated 7 months ago
Alternatives and similar repositories for Logical_modelling_pipeline
Users that are interested in Logical_modelling_pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- "Independent Component Analysis of BIg Omics Data"☆15Nov 3, 2022Updated 3 years ago
- CANAlization: Control & Redundancy in Boolean Networks☆26Sep 29, 2026Updated 2 weeks ago
- Compares two images using Siamese Network (machine learning) trained from a Pytorch Implementation☆10Jul 27, 2021Updated 5 years ago
- DYNamics Agnostic Network MOdels☆18Jul 3, 2018Updated 8 years ago
- Multiscale simulation of multi-cellular system☆30Jul 31, 2020Updated 6 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Multiscale simulation of multi-cellular system☆11Updated this week
- ☆14Sep 2, 2026Updated last month
- Trefle is a scikit-learn compatible estimator implementing the FuzzyCoCo algorithm that uses a cooperative coevolution algorithm to find …☆13Jan 12, 2019Updated 7 years ago
- toolkit for the manipulation and analysis of Logical Qualitative Models of biological regulatory networks☆20Apr 22, 2026Updated 5 months ago
- SyncToy, but brought up-to-date with a Fluent design and a nod to the past.☆13May 14, 2024Updated 2 years ago
- A collection of 280+ Boolean networks from various sources useful for benchmarking or testing.☆24May 29, 2026Updated 4 months ago
- Static analyzer for dynamics of Automata Networks☆13Feb 3, 2021Updated 5 years ago
- Single cell pipelines☆17Jun 14, 2026Updated 4 months ago
- R package for extracting mutation signatures from a list of somatic mutations☆38Aug 9, 2019Updated 7 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Simplex space operations for compositional data implemented in Python.☆13Feb 17, 2022Updated 4 years ago
- The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks☆27Oct 7, 2026Updated last week
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)☆12Mar 2, 2023Updated 3 years ago
- Simple distributed data manipulation and processing routines in Julia☆16Mar 22, 2022Updated 4 years ago
- Introduction to R for Humanitarian Data Science☆20Jan 25, 2017Updated 9 years ago
- Boolean Network Modeling☆41Updated this week
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆45Apr 16, 2021Updated 5 years ago
- ActiveDriverDB☆12May 1, 2023Updated 3 years ago
- ☆12Feb 12, 2018Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Main repository for Drews et al. (Nature, 2022)☆44Aug 14, 2023Updated 3 years ago
- Bioconductor components for general cancer genomics☆11Feb 5, 2023Updated 3 years ago
- Add functional variant annotation to MAF file☆11Nov 20, 2024Updated last year
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆39Mar 12, 2025Updated last year
- An alignment-free approach to estimating exon-inclusion ratios without a reference transcriptome☆10Jan 25, 2019Updated 7 years ago
- Tutorial for running Mendelian Randomization analysis using R☆38Apr 29, 2024Updated 2 years ago
- A tool for investigating alternative mRNA splicing in next generation mRNA sequence data.☆12Mar 3, 2017Updated 9 years ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- ☆12May 30, 2023Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆32Dec 6, 2017Updated 8 years ago
- Source code for integrative nonnegative matrix factorization☆20Jul 12, 2018Updated 8 years ago
- tugHall: a simulator of cancer cell evolution based on the hallmarks of cancer, linked to the mutational states of tumor-related genes. T…☆13Dec 11, 2023Updated 2 years ago
- Selecting features as (network) nodes☆11May 27, 2018Updated 8 years ago
- v1☆10Oct 21, 2020Updated 5 years ago
- pytest-plus adds new features to pytest☆12Oct 27, 2025Updated 11 months ago
- A repository that stores all the MCP servers for creating biological mechanistic models. It includes server for NeKo, MaBoSS, PhysiCell/P…☆19Updated this week