gerstung-lab / MDS-expressionLinks
R code for Combining gene mutation with gene expression data improves outcome prediction in myelodysplastic syndromes
☆12Updated 9 years ago
Alternatives and similar repositories for MDS-expression
Users that are interested in MDS-expression are comparing it to the libraries listed below
Sorting:
- Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkers☆20Updated 2 years ago
- ☆25Updated 3 months ago
- Code to reproduce TNBC analysis and figures☆24Updated 3 years ago
- R package☆22Updated last year
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆32Updated 3 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆22Updated 4 years ago
- Calculating Tumor microenvironment score☆29Updated 2 years ago
- Gene-level general linear mixed model☆22Updated 7 months ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆36Updated 4 months ago
- ☆16Updated 2 years ago
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- A General Framework for Consensus Partitioning☆63Updated 6 months ago
- Immune evasion before tumor invasion in early squamous lung cell carcinogenesis☆16Updated 4 years ago
- An R package for visualising cell-cell interactions☆44Updated last year
- Molecular Signatures Database (MSigDB) in a data frame☆16Updated 6 years ago
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆12Updated 4 years ago
- An r package that works as a wrapper to homologene☆46Updated last year
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆45Updated 2 years ago
- Pretty, simple, optionally interactive plots for bioinformatics analysis pipelines☆14Updated 2 years ago
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".☆18Updated 6 years ago
- Cancer Dependency Map package☆30Updated last year
- Tumour Heterogeneity and Intercellular Networks of Nasopharyngeal Carcinoma at Single Cell Resolution☆13Updated 2 years ago
- Dichotomous of innate immune landscape☆17Updated 6 years ago
- BioCarta pathway images☆11Updated last year
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆21Updated 2 months ago
- Tools for manipulating annotated data matrices☆92Updated 3 years ago
- R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)☆36Updated 8 months ago
- corto (Correlation Tool): an R package to generate correlation-based DPI networks☆20Updated 2 years ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆31Updated 2 years ago