marcos-diazg / musica
MuSiCa - Mutational Signatures in Cancer
☆23Updated last year
Alternatives and similar repositories for musica:
Users that are interested in musica are comparing it to the libraries listed below
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- WES HLA Typing based on multiple alternative tools☆15Updated 4 years ago
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Updated last year
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Toolkit for benchmarking fusion transcript predictions☆19Updated 8 months ago
- Targeted and non-targeted anticancer drugs and drug regimens☆28Updated this week
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- Python function for TMB snake plots☆16Updated 4 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆16Updated last year
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆20Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Multi-sample cancer phylogeny reconstruction☆35Updated 7 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆13Updated 3 years ago
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆14Updated 8 years ago
- RNA Fusion Detection and Quantification☆17Updated 6 years ago
- A webtool for the clinical interpretation of CNVs in rare disease patients☆12Updated 2 years ago
- ☆12Updated last year
- BigWig manpulation tools using libBigWig and htslib☆29Updated 8 months ago
- Rna-seq pipeline, From FASTQ to differential expression analysis...☆20Updated 8 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 9 months ago
- Aggregation and analyses of rare CNVs across diseases☆14Updated 2 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆17Updated 9 months ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆23Updated 3 months ago
- DriverPower☆26Updated 3 months ago
- Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…☆14Updated 4 months ago
- Flexible Bayesian inference of mutational signatures☆34Updated 2 years ago