marcos-diazg / musicaLinks
MuSiCa - Mutational Signatures in Cancer
☆23Updated last year
Alternatives and similar repositories for musica
Users that are interested in musica are comparing it to the libraries listed below
Sorting:
- Library for indexing VCF files for random access searches by rsID☆17Updated 3 months ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 6 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆14Updated 9 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Updated 4 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- A comprehensive gene set function enrichment tool for multiple species.☆14Updated 5 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆20Updated 6 months ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Machine learning use cases for teaching☆13Updated 8 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Subclonal Hierarchy Inference from Somatic Mutations☆21Updated 8 months ago
- A novel management, annotation, and machine learning framework for analyzing cancer mutations☆31Updated last year
- A webtool for the clinical interpretation of CNVs in rare disease patients☆12Updated 3 years ago
- Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.☆35Updated this week
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Updated last year
- Clonal reconstruction from HTS data☆10Updated 4 years ago
- Interactive eQTL visualizations☆13Updated 2 years ago
- ☆11Updated 2 years ago
- ☆12Updated 6 years ago
- Easily run WDL workflows on GCP☆14Updated 4 years ago
- Comprehensive Human Expressed SequenceS☆18Updated 3 months ago
- Python function for TMB snake plots☆16Updated 5 years ago
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆13Updated 2 years ago
- Allele frequency filter app☆14Updated 3 years ago
- mitochondrial variant analysis tools☆15Updated 4 years ago
- Exploration, clustering, visualization and classification of DNA damage patterns☆19Updated 4 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- ☆28Updated 7 years ago