carjed / helmsmanLinks
highly-efficient & lightweight mutation signature matrix aggregation
☆18Updated 3 years ago
Alternatives and similar repositories for helmsman
Users that are interested in helmsman are comparing it to the libraries listed below
Sorting:
- Flexible Bayesian inference of mutational signatures☆35Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago
- ☆33Updated 3 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- Utility functions for FACETS☆38Updated last year
- Multi-sample cancer phylogeny reconstruction☆35Updated 7 years ago
- DriverPower☆26Updated 6 months ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 4 months ago
- Mapped QC analysis program☆44Updated 7 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- ☆36Updated 6 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- An R package for predicting HR deficiency from mutation contexts☆29Updated 5 months ago
- Filter and prioritize fusion calls☆20Updated 10 months ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆17Updated 2 months ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆27Updated last month
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- R package for applying Gamma-Poisson regression to identify statistical enrichment or depletion of somatic mutations in regions after cor…☆30Updated 2 years ago