Genomon-Project / paplot
paplot creates various dynamic and interactive reports for cancer genome analysis.
☆25Updated 2 years ago
Alternatives and similar repositories for paplot:
Users that are interested in paplot are comparing it to the libraries listed below
- RNA-seq Viewer Team at the NCBI-assisted Boston Genomics Hackathon☆37Updated 7 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆43Updated 5 years ago
- See the main fork of this repository here >>>☆38Updated 2 months ago
- fast webservices based query tool for large sets of genomic features☆25Updated last month
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆50Updated 5 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 5 months ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 9 months ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago
- Exon-exon splice junctions across SRA☆40Updated 3 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆41Updated 7 years ago
- Mapped QC analysis program☆44Updated 6 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 3 years ago
- ☆25Updated 7 years ago
- ☆20Updated 8 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- The Genome U-Plot is a JavaScript tool to visualize chromosomal abnormalities in the Human Genome using a U-shape layout.☆31Updated 2 years ago
- A webtool for the clinical interpretation of CNVs in rare disease patients☆12Updated 2 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆28Updated last year
- Code to reproduce analyses from the sleuth paper☆16Updated 6 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Benchmarks for RNA-seq quantification pipelines☆8Updated 5 years ago