Genomon-Project / paplot
paplot creates various dynamic and interactive reports for cancer genome analysis.
☆25Updated 2 years ago
Alternatives and similar repositories for paplot:
Users that are interested in paplot are comparing it to the libraries listed below
- RNA-seq Viewer Team at the NCBI-assisted Boston Genomics Hackathon☆37Updated 7 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆43Updated 5 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel☆28Updated 5 months ago
- ☆20Updated 7 years ago
- CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens☆19Updated 5 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 6 years ago
- Simplify snpEff annotations for interesting cases☆21Updated 6 years ago
- Integrative pipeline for profiling DNA copy number and inferring tumor phylogeny☆20Updated 5 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 5 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆27Updated last year
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- MuSiCa - Mutational Signatures in Cancer☆23Updated last year
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 5 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 2 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- detection of mutations causing splicing change☆13Updated 2 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 6 months ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 2 months ago
- CAVA (Clinical Annotation of VAriants)☆14Updated 6 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆39Updated 7 years ago
- A comprehensive pipeline to analyze and visualize structural variants☆20Updated 5 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 8 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 8 years ago
- See the main fork of this repository here >>>☆38Updated 2 months ago
- ☆14Updated 7 years ago
- structure detection program☆17Updated 3 months ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago