Genomon-Project / GenomonSVLinks
structure detection program
☆17Updated 8 months ago
Alternatives and similar repositories for GenomonSV
Users that are interested in GenomonSV are comparing it to the libraries listed below
Sorting:
- IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split …☆16Updated last year
- ☆20Updated 3 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Reconstruction of focal amplifications with long reads☆21Updated 2 weeks ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆28Updated 4 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- ☆23Updated 7 months ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated last year
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated 3 weeks ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated this week
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 5 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- ☆51Updated 5 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 5 months ago
- A tool for evaluating RNA seq mapping☆22Updated 6 years ago
- Integrative analysis of complex structural variants☆22Updated 4 years ago
- Detection and Visualization of Exon-Level Copy Number Variants in Targeted Next Generation Sequencing Data☆17Updated 3 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆30Updated 2 weeks ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated last year
- A bioinformatics tool for SV detection and virus integration discovery☆20Updated 7 years ago
- ☆18Updated 3 years ago
- A simple script to create a customizable html file from an AnnotSV output.☆19Updated last year
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Updated last month
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago
- Fast and scalable variant annotation tool☆30Updated 3 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 5 months ago
- Specific Transposable Element Aligner (HERV-K)☆16Updated 5 years ago
- Long read to rMATS☆32Updated 2 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago