Alternatives and similar repositories for GenomonSV

Users that are interested in GenomonSV are comparing it to the libraries listed below

• KolmogorovLab / minda
  ☆27Updated 9 months ago
• Oshlack / MINTIE
  Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
  ☆37Updated last year
• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆25Updated 7 years ago
• namphuon / ViFi
  Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.
  ☆30Updated 4 years ago
• vpc-ccg / svict
  Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA
  ☆29Updated last year
• NCGG-MGC / IMSindel
  IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split …
  ☆16Updated 2 years ago
• mskilab-org / gGnome
  R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework
  ☆41Updated 3 weeks ago
• molgenis / CoNVaDING
  Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…
  ☆21Updated 5 years ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• broadinstitute / VariantBam
  Filtering and profiling of next-generational sequencing data using region-specific rules
  ☆25Updated 9 years ago
• Oshlack / Clinker
  Gene Fusion Visualiser
  ☆51Updated 3 years ago
• vpc-ccg / calib
  Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.
  ☆40Updated 2 years ago
• cortes-ciriano-lab / ReConPlot
  ☆24Updated last year
• mobidic / knotAnnotSV
  A simple script to create a customizable html file from an AnnotSV output.
  ☆19Updated last year
• nygenome / Lancet2
  v2.x of the microassembly based somatic variant caller
  ☆23Updated 6 months ago
• ccgd-profile / BreaKmer
  A method to identify structural variation from sequencing data in target regions
  ☆32Updated 5 years ago
• viq854 / lichee
  Multi-sample cancer phylogeny reconstruction
  ☆36Updated 8 years ago
• ccbiolab / svpluscnv
  Integrative analysis of complex structural variants
  ☆22Updated 5 years ago
• rdemolgen / SavvySuite
  Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes
  ☆31Updated 5 months ago
• TheJacksonLaboratory / SVE
  ☆51Updated 6 years ago
• dermasugita / Viola-SV
  Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.
  ☆26Updated last year
• SD-Genomics / DeviCNV
  Detection and Visualization of Exon-Level Copy Number Variants in Targeted Next Generation Sequencing Data
  ☆18Updated 4 years ago
• isugifNF / GATK-flow
  Nextflow implementation of the GATK HaplotypeCaller pipeline
  ☆13Updated last month
• talkowski-lab / svtk
  ☆35Updated 4 years ago
• EI-CoreBioinformatics / portcullis
  Splice junction analysis and filtering from BAM files
  ☆42Updated 3 years ago
• kkrizanovic / RNAseqEval
  A tool for evaluating RNA seq mapping
  ☆22Updated 6 years ago
• griffithlab / VAtools
  A set of tools to annotate VCF files with expression and readcount data
  ☆30Updated 10 months ago
• kgori / sigfit
  Flexible Bayesian inference of mutational signatures
  ☆38Updated 3 years ago
• qiukunlong / seeksv
  A bioinformatics tool for SV detection and virus integration discovery
  ☆21Updated 8 years ago
• dantaki / CNVplot
  Plot CNV data with a genome viewer in R
  ☆15Updated 8 years ago