structure detection program
☆18Nov 20, 2024Updated last year
Alternatives and similar repositories for GenomonSV
Users that are interested in GenomonSV are comparing it to the libraries listed below
Sorting:
- A software to detect virome-wide integrations☆13Jan 27, 2021Updated 5 years ago
- Genomic Visualization Catalog☆13Oct 6, 2022Updated 3 years ago
- SV detection tool for nanopore sequence reads☆97Jan 7, 2026Updated last month
- A bioinformatics tool for SV detection and virus integration discovery☆21Sep 12, 2017Updated 8 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 6 years ago
- SV clustering☆31Jul 5, 2021Updated 4 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Dec 31, 2025Updated 2 months ago
- IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split …☆16Aug 22, 2023Updated 2 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆20Feb 21, 2026Updated last week
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆27Feb 23, 2026Updated last week
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Aug 19, 2020Updated 5 years ago
- ☆27Apr 17, 2025Updated 10 months ago
- This script use to analyze the immune repertoire sequenced by high throughtput sequencing☆27Dec 16, 2021Updated 4 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- linearize and simplify variation graphs using blocked partial order alignment☆60Updated this week
- Genome-wide reconstruction of complex structural variants☆39Jun 21, 2022Updated 3 years ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 8 months ago
- Python deployment tool for bespoke image curation projects, oriented toward scientific projects. Please cite https://academic.oup.com/gig…☆13Aug 6, 2022Updated 3 years ago
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- ☆11Feb 20, 2024Updated 2 years ago
- ☆13Feb 18, 2026Updated last week
- A python command line tool to generate modbed files for visualization on WashU Epigenome Browser☆11Dec 10, 2025Updated 2 months ago
- ☆13Nov 15, 2017Updated 8 years ago
- A mosaic genome painting tool for plant genomes☆18Mar 4, 2025Updated 11 months ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- Structural variant detection and association testing☆108Feb 2, 2023Updated 3 years ago
- a pileup library that embraces the huge☆43Oct 2, 2020Updated 5 years ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆279May 21, 2025Updated 9 months ago
- Structural variation and indel detection by local assembly☆252Sep 16, 2025Updated 5 months ago
- Interactive multiscale visualization for structural variation in human genomes☆72Feb 19, 2026Updated last week
- The Modular Aligner and The Modular SV Caller☆46Jul 18, 2023Updated 2 years ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆16Jan 12, 2026Updated last month
- Generate Novel Insights from Gene Correlation Data☆13Jun 27, 2022Updated 3 years ago
- BGZF Stream☆13Jul 27, 2023Updated 2 years ago
- Hemang Parikh☆11Jan 12, 2016Updated 10 years ago
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 3 years ago