juliangehring / SomaticSignaturesLinks
The SomaticSignatures package offers the framework for identifying mutational signatures of single nucleotide variants (SNVs) from high-throughput experiments.
☆22Updated 5 years ago
Alternatives and similar repositories for SomaticSignatures
Users that are interested in SomaticSignatures are comparing it to the libraries listed below
Sorting:
- Flexible Bayesian inference of mutational signatures☆35Updated 2 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- Identifying recurrent mutations in cancer☆37Updated 4 years ago
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆49Updated 11 months ago
- Filters for false-positive mutation calls in NGS☆30Updated 6 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 2 months ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- DriverPower☆26Updated 5 months ago
- Run Picard on BAM files and collate 90 metrics into one file.☆41Updated 7 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆53Updated last month
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆69Updated 3 years ago
- Useful tools for working with Salmon output☆38Updated 5 years ago
- Tool for RNA-Seq analysis.☆39Updated 3 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 6 years ago
- Exon-exon splice junctions across SRA☆41Updated 3 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- ☆78Updated 11 years ago
- ☆33Updated 3 years ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Updated 2 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 11 months ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago