juliangehring / SomaticSignaturesLinks
The SomaticSignatures package offers the framework for identifying mutational signatures of single nucleotide variants (SNVs) from high-throughput experiments.
☆22Updated 5 years ago
Alternatives and similar repositories for SomaticSignatures
Users that are interested in SomaticSignatures are comparing it to the libraries listed below
Sorting:
- Flexible Bayesian inference of mutational signatures☆36Updated 2 years ago
- Fast fusion detection using kallisto☆80Updated 2 months ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- Filters for false-positive mutation calls in NGS☆32Updated 6 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆70Updated 4 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Identifying recurrent mutations in cancer☆37Updated 4 years ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 7 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- DriverPower☆26Updated 7 months ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆49Updated last year
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- ☆78Updated 11 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- combining p-values using modified stouffer-liptak for spatially correlated results (probes)☆46Updated 3 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆53Updated last month
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- ☆33Updated 3 years ago
- Make rapid visualizations of RNA-seq data in R☆19Updated 6 years ago