gerstung-lab / tensorsignatures
A python package for learning mutational signatures and their multidimensional genomic properties
☆14Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for tensorsignatures
- Testing a neutral evolution model on cancer sequencing data☆10Updated 3 years ago
- ☆26Updated last year
- Vaeda method for computational doublet annotation☆13Updated 4 months ago
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆10Updated 3 weeks ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆20Updated 7 months ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆24Updated 10 months ago
- Analysis of snRNA-seq2 data coming from 3 months old mouse liver, dissecting the influence ploidy has on gene expression.☆12Updated 2 years ago
- Optimizing Cancer Mutation Signatures Jointly with Sampling Likelihood☆10Updated 2 years ago
- Inferring gene co-expression networks from single cell gene expression data☆24Updated 2 years ago
- Dynamical systems methods for RNA velocity analysis☆23Updated 3 years ago
- epigenome analysis to rank transcription factors☆13Updated 4 years ago
- High-definition modeling of chromatin + transcriptomics data☆18Updated 2 weeks ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 3 years ago
- The algorithm, supervised Capacity Mapping (supCPM), to visualize scRNA-seq data☆7Updated 2 months ago
- Multi-study integration of cellular trajectories☆18Updated 4 years ago
- A framework to infer mutational signatures in cancer over time☆53Updated 5 years ago
- ☆12Updated 3 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆21Updated 6 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 3 years ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆20Updated 2 months ago
- ☆11Updated 5 years ago
- A Tidy Framework to Hack Gene Expression Signatures☆19Updated last year
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 2 months ago
- Supporting material for publication: "Ovarian cancer mutational processes drive site-specific immune evasion"☆19Updated last year
- ☆18Updated last year
- A set of Pyro models and functions to infer CNA from scRNA-seq data☆11Updated last year
- Gene Expression Decomposition and Integration☆15Updated 3 months ago
- Personalized prioritization of driver genes in cancer☆9Updated 2 years ago
- Marker gene selection from scRNA-seq data☆15Updated 4 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆24Updated 3 years ago