gerstung-lab / tensorsignaturesLinks
A python package for learning mutational signatures and their multidimensional genomic properties
☆15Updated 4 years ago
Alternatives and similar repositories for tensorsignatures
Users that are interested in tensorsignatures are comparing it to the libraries listed below
Sorting:
- ☆27Updated last year
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- Testing a neutral evolution model on cancer sequencing data☆10Updated 4 years ago
- A framework to infer mutational signatures in cancer over time☆53Updated 6 years ago
- CiteFuse:☆28Updated 2 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated 11 months ago
- ☆18Updated 2 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated 8 months ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Spatial RNA velocity☆10Updated 9 months ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Updated 4 years ago
- Inferring selection in cancer sequencing data using ABC and population based simulations☆11Updated 4 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated 2 weeks ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated last year
- Calibrate and compare methods for denoising single-cell RNA-seq data☆2Updated 4 years ago
- Vaeda method for computational doublet annotation☆16Updated last year
- Regulatory networks with Direct Information☆16Updated 5 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 6 years ago
- Contribution of systemic and somatic factors to clinical response and resistance in urothelial cancer: an exploratory multi-omic analysis☆23Updated 7 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- A Julia package for extracting mutation signatures using topic models☆19Updated 3 years ago
- Automated marker-based annotation of cell types☆13Updated 2 years ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated 8 months ago
- Single cell interactive plotting tools☆23Updated 5 years ago
- ☆16Updated 3 years ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆22Updated 10 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Algorithms for single-cell analysis☆29Updated 3 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆14Updated 4 years ago