Alternatives and similar repositories for DangerTrack:

Users that are interested in DangerTrack are comparing it to the libraries listed below

• lh3 / unicall
  A wrapper for calling small variants from human germline high-coverage single-sample Illumina data
  ☆13Updated 5 years ago
• bioinform / breakseq2
  BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants
  ☆24Updated 8 years ago
• ssadedin / ximmer
  Ximmer is a system for CNV calling on exome and targeted genomic sequencing
  ☆19Updated last week
• broadinstitute / SnowmanSV
  Structural variation and indel detection using rolling local string graph assembly
  ☆9Updated 8 years ago
• Illumina / tHapMix
  Haplotype-based somatic genome simulator
  ☆10Updated 7 years ago
• ma-compbio / Weaver
  Allele-Specific Quantification of Structural Variations in Cancer Genomes
  ☆17Updated 5 years ago
• ImperialCardioGenetics / frequencyFilter
  Allele frequency filtering for Mendelian variant discovery
  ☆17Updated 8 years ago
• DecodeGenetics / graphtyper-pipelines
  Recommended Graphtyper pipelines
  ☆14Updated 4 years ago
• aganezov / RCK
  RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes
  ☆17Updated 4 years ago
• jcarrotzhang / LoLoPicker
  picking up low allelic-fraction, somatic variants from tumor samples
  ☆14Updated 7 years ago
• tgen / LumosVar
  ☆11Updated 6 years ago
• raphael-group / NAIBR
  Novel Adjacency Identification with Barcoded Reads
  ☆13Updated 2 years ago
• mskilab-org / pgv
  Pan gGnome Viewer
  ☆10Updated last year
• DecodeGenetics / read_haps
  Detects human contamination in bam files
  ☆16Updated 4 years ago
• dnanexus-rnd / DeepVariant-GLnexus-WDL
  WDL workflow for population variant calling using htsget, DeepVariant, and GLnexus
  ☆10Updated 6 years ago
• collaborativebioinformatics / GeneVar
  ☆12Updated 3 years ago
• quinlan-lab / ccrhtml
  A small repo for storing the code for making the files and html for CCRs.
  ☆22Updated 5 years ago
• DecodeGenetics / popSTR
  PopSTR - A Population based microsatellite genotyper
  ☆32Updated last year
• medvedevgroup / vargeno
  Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.
  ☆20Updated 6 years ago
• luntergroup / bamsplit
  Split a BAM file by haplotype support
  ☆16Updated 7 years ago
• usnistgov / SVClassify
  Hemang Parikh
  ☆11Updated 9 years ago
• aquaskyline / 16GT
  Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
  ☆27Updated last year
• clemgoub / TypeTE
  Genotyping of segregating mobile elements insertions
  ☆19Updated 3 years ago
• jamesware / alleleFrequencyApp
  Allele frequency filter app
  ☆14Updated 2 years ago
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated 3 months ago
• jengelmann / FastqPuri
  fastq quality assessment and filtering tool
  ☆18Updated 2 years ago
• DecodeGenetics / LRS_SV_sets
  VCF files of SVs using long-read sequencing (LRS).
  ☆21Updated 3 years ago
• sinamajidian / phaseme
  A tool set to assess the quality of the per read phasing and reduce the errors.
  ☆12Updated 4 years ago
• uclahs-cds / tool-NFTest
  CLI to automate Nextflow pipeline testing
  ☆12Updated 3 months ago
• lh3 / rtgeval
  Wrapper for RTG's vcfeval; DEPRECATED!
  ☆21Updated 8 years ago