friend1ws / EBCallLinks
an empirical Bayesian framework for mutation detection from cancer genome sequencing data
☆31Updated 9 years ago
Alternatives and similar repositories for EBCall
Users that are interested in EBCall are comparing it to the libraries listed below
Sorting:
- An awk-like VCF parser☆56Updated 2 years ago
- R package designed to simplify structural variant analysis☆74Updated 4 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Concordance and contamination estimator for tumor–normal pairs☆59Updated last year
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- Mapped QC analysis program☆43Updated 7 years ago
- ☆78Updated 11 years ago
- Thousand Variant Callers Project Repository☆74Updated 6 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 6 years ago
- A read extraction and realignment tool for next generation sequencing data☆104Updated 3 years ago
- ☆55Updated 5 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Updated 3 years ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Updated 2 years ago
- Multi-sample somatic variant caller☆52Updated 4 years ago
- QDNAseq package for Bioconductor☆54Updated last year
- Tip and tricks for BAM files☆86Updated 7 years ago
- ☆82Updated 3 years ago
- ⛏ HLA predictions from NGS shotgun data☆55Updated 7 months ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Precision HLA typing from next-generation sequencing data☆77Updated 3 weeks ago
- R package for inferring copy number from read depth☆32Updated 3 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 7 years ago
- Read visualizer for structural variants☆84Updated 7 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆57Updated this week
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- ☆96Updated 3 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 10 years ago
- Generic human DNA variant annotation pipeline☆59Updated last year