an empirical Bayesian framework for mutation detection from cancer genome sequencing data
☆31Apr 5, 2016Updated 10 years ago
Alternatives and similar repositories for EBCall
Users that are interested in EBCall are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- structure detection program☆18Nov 20, 2024Updated last year
- picking up low allelic-fraction, somatic variants from tumor samples☆14Jan 4, 2018Updated 8 years ago
- paplot creates various dynamic and interactive reports for cancer genome analysis.☆26Feb 1, 2023Updated 3 years ago
- An efficient Variant-Caller to highlight low allele-frequency tumor mutations in a clinical practice☆11Jun 5, 2023Updated 3 years ago
- R package for extracting mutation signatures from a list of somatic mutations☆37Aug 9, 2019Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- detection of mutations causing splicing change☆13Oct 6, 2022Updated 3 years ago
- ☆23Sep 4, 2018Updated 7 years ago
- An Expectation-Maximization algorithm to infer mutational signatures☆27Nov 16, 2016Updated 9 years ago
- ☆11Jul 13, 2018Updated 8 years ago
- for detecting internal tandem duplication from genome sequence data.☆12May 16, 2019Updated 7 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Sep 28, 2022Updated 3 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated 2 years ago
- Tools for working with genomic and high throughput sequencing data.☆371Updated this week
- Published at Bioinformatics☆12Jul 4, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆78Mar 6, 2014Updated 12 years ago
- ☆15Jan 19, 2018Updated 8 years ago
- Query language for filtering SAM/BAM reads☆31Oct 15, 2024Updated last year
- Homebrew repository for CloudBioLinux: incubator for formulas to end up in homebrew-science☆19Oct 17, 2016Updated 9 years ago
- High-level API for storing and querying sequence variant data☆20May 24, 2019Updated 7 years ago
- ☆18Jul 2, 2026Updated 3 weeks ago
- Create and maintain phylogenetic "reference packages" of biological sequences.☆22May 27, 2026Updated 2 months ago
- Build components for CloudMan, Galaxy on the Cloud, or Galaxy Server☆20Jun 27, 2017Updated 9 years ago
- Barcoded Molecular Families☆22Nov 20, 2017Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- Analysis pipeline for cancer sequencing data☆113Apr 24, 2026Updated 3 months ago
- The BaitFisher-package is a software package for designing hybrid enrichment probes. For more information see:☆13Oct 20, 2021Updated 4 years ago
- The original version of MGA has been archived - please see https://github.com/crukci-bioinformatics/mga2 instead.☆24Apr 15, 2021Updated 5 years ago
- This script use to analyze the immune repertoire sequenced by high throughtput sequencing☆28Dec 16, 2021Updated 4 years ago
- VarDict Java port☆141Jan 5, 2024Updated 2 years ago
- VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files☆37Nov 19, 2019Updated 6 years ago
- FusionInspector code☆63May 21, 2026Updated 2 months ago
- SEEKIN: SEquence-based Estimation of KINship☆15Oct 11, 2017Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Browser based application for viewing bam alignments☆56Dec 16, 2016Updated 9 years ago
- Multi-sample somatic variant caller☆52Jan 27, 2022Updated 4 years ago
- A software to detect virome-wide integrations☆13Jan 27, 2021Updated 5 years ago
- Tool for quick offline batch conversion of Genbank IDs or accessions to taxonomy strings☆14Jan 8, 2024Updated 2 years ago
- Fast Structural Variation Detection Toolbox☆19Feb 16, 2015Updated 11 years ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆251Updated this week
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆28Jul 26, 2024Updated 2 years ago