friend1ws / EBCallLinks
an empirical Bayesian framework for mutation detection from cancer genome sequencing data
☆31Updated 9 years ago
Alternatives and similar repositories for EBCall
Users that are interested in EBCall are comparing it to the libraries listed below
Sorting:
- An awk-like VCF parser☆56Updated last year
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated last year
- Multi-sample somatic variant caller☆52Updated 3 years ago
- ☆78Updated 11 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆58Updated 8 years ago
- Concordance and contamination estimator for tumor–normal pairs☆58Updated 10 months ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆53Updated 8 years ago
- ☆46Updated 5 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- Read visualizer for structural variants☆84Updated 7 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆51Updated 3 years ago
- Thousand Variant Callers Project Repository☆73Updated 5 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆50Updated this week
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- My bioinfo toolbox☆50Updated 7 months ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- List of IARC bioinformatics pipelines and resources☆53Updated 2 months ago
- Method for detecting STR expansions from short-read sequencing data☆63Updated 3 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago