friend1ws / EBCallLinks
an empirical Bayesian framework for mutation detection from cancer genome sequencing data
☆31Updated 9 years ago
Alternatives and similar repositories for EBCall
Users that are interested in EBCall are comparing it to the libraries listed below
Sorting:
- An awk-like VCF parser☆56Updated last year
- Concordance and contamination estimator for tumor–normal pairs☆58Updated last year
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Updated last year
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆54Updated 8 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- ☆78Updated 11 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 5 years ago
- Burden testing against public controls☆50Updated last year
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- ☆46Updated 5 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- ⛏ HLA predictions from NGS shotgun data☆55Updated 4 months ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆52Updated 3 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 3 years ago
- QDNAseq package for Bioconductor☆52Updated last year
- identifying mutational significance in cancer genomes☆62Updated 2 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Thousand Variant Callers Project Repository☆73Updated 6 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆54Updated 2 weeks ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆73Updated last year
- Kourami: Graph-guided assembly for HLA alleles☆38Updated 6 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 8 months ago
- ☆54Updated 5 years ago
- ☆54Updated 2 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago