an empirical Bayesian framework for mutation detection from cancer genome sequencing data
☆31Apr 5, 2016Updated 9 years ago
Alternatives and similar repositories for EBCall
Users that are interested in EBCall are comparing it to the libraries listed below
Sorting:
- picking up low allelic-fraction, somatic variants from tumor samples☆14Jan 4, 2018Updated 8 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated 2 years ago
- ☆23Sep 4, 2018Updated 7 years ago
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Sep 28, 2022Updated 3 years ago
- ☆11Jul 13, 2018Updated 7 years ago
- Sample an approximate number of reads from a fastq file without reading the entire file☆11Jun 20, 2017Updated 8 years ago
- An efficient Variant-Caller to highlight low allele-frequency tumor mutations in a clinical practice☆11Jun 5, 2023Updated 2 years ago
- SEEKIN: SEquence-based Estimation of KINship☆14Oct 11, 2017Updated 8 years ago
- Analysis pipeline for cancer sequencing data☆112Apr 30, 2025Updated 10 months ago
- FLS Galaxy tools and tool-wrappers for in-house and third-party bioinformatic applications.☆14Mar 20, 2024Updated last year
- Multi-sample somatic variant caller☆52Jan 27, 2022Updated 4 years ago
- PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using …☆30Jun 17, 2025Updated 8 months ago
- Random collection of bioinformatics thingies☆19Mar 13, 2016Updated 9 years ago
- Query language for filtering SAM/BAM reads☆31Oct 15, 2024Updated last year
- ☆43Apr 20, 2016Updated 9 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- The 3rd incarnation of the Wise package for sequence analysis☆23Jun 19, 2014Updated 11 years ago
- VarDict Java port☆138Jan 5, 2024Updated 2 years ago
- NGS duplicate marking☆19Apr 6, 2021Updated 4 years ago
- RNA-seq data comprehensive data analysis toolbox☆20Oct 18, 2022Updated 3 years ago
- A high-performance search engine for large-scale genomic interval datasets☆19Sep 1, 2021Updated 4 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files☆37Nov 19, 2019Updated 6 years ago
- Reference-based compression of SRA data☆37Mar 26, 2013Updated 12 years ago
- structure detection program☆18Nov 20, 2024Updated last year