cemalley / scRNASeq-bulkRNASeqLinks
single cell and bulk RNASeq analysis scripts
☆12Updated 3 years ago
Alternatives and similar repositories for scRNASeq-bulkRNASeq
Users that are interested in scRNASeq-bulkRNASeq are comparing it to the libraries listed below
Sorting:
- ☆16Updated 2 years ago
- bioinformatics R test code☆14Updated 3 weeks ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- Data visualization with R☆12Updated 4 years ago
- This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing revea…☆11Updated last year
- ☆12Updated 5 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- ☆11Updated last year
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆11Updated 3 years ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆25Updated 2 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆12Updated 2 years ago
- ☆12Updated 4 years ago
- Function Enrichment analysis and Network construction☆12Updated last week
- ☆23Updated 2 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- R package for tissue-specific gene enrichment☆14Updated 3 years ago
- ☆16Updated last year
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆32Updated 3 years ago
- Codes for our paper "Single-Cell RNA-Seq Reveals Dynamic Early Embryonic-like Programs during Chemical Reprogramming" published by Cell S…☆11Updated 4 years ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆12Updated last year
- ☆11Updated 5 years ago
- ☆9Updated last month
- 🌓 Allele specific analyses across cell states and conditions☆10Updated 2 years ago
- Scripts for plotting figures and running analysis throughout the manuscript☆11Updated 3 years ago
- ☆17Updated last year
- ☆10Updated last month
- RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)☆10Updated 6 years ago
- Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel☆15Updated 2 years ago
- Readme☆10Updated 5 years ago
- Cell type enrichment analysis using gene signatures and cluster markers☆9Updated 7 years ago