markowetzlab / Drews2022_CIN_CompendiumLinks
Main repository for Drews et al. (Nature, 2022)
☆41Updated last year
Alternatives and similar repositories for Drews2022_CIN_Compendium
Users that are interested in Drews2022_CIN_Compendium are comparing it to the libraries listed below
Sorting:
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- ☆13Updated 7 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- An R package to time somatic mutations☆61Updated 4 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Updated 2 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated last year
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 10 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆19Updated 3 years ago
- Micro DNA identification☆23Updated 3 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆19Updated 3 months ago
- MutSig2CV from Lawrence et al. 2014☆31Updated 4 years ago
- An R package for predicting HR deficiency from mutation contexts☆28Updated 3 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 2 months ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- ☆38Updated 5 years ago
- ☆17Updated 6 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 6 months ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆20Updated last year
- Codes and Data for FFPEsig manuscript☆17Updated last year
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆20Updated 2 years ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- ☆17Updated 4 years ago
- DCC/DAC methylation pipeline source☆55Updated 4 years ago
- ☆25Updated last year
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Updated 4 years ago
- Rocking R at UMCCR☆9Updated 4 years ago