danro9685 / SparseSignatures
Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009119
☆11Updated 2 weeks ago
Alternatives and similar repositories for SparseSignatures:
Users that are interested in SparseSignatures are comparing it to the libraries listed below
- ☆13Updated 2 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 5 years ago
- Machine learning use cases for teaching☆13Updated 7 years ago
- R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases☆22Updated 5 months ago
- PhenomeXcan: mapping the genome to the phenome through the transcriptome☆11Updated 4 years ago
- Core utilities for single-cell RNA-seq☆12Updated 3 weeks ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- R interface to megadepth: BigWig and BAM related utilities☆12Updated 4 months ago
- ☆11Updated last year
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆10Updated last year
- The Cancer bioMarker Prediction Pipeline (CAMPP)☆17Updated 4 years ago
- Code for EpiMap data browser☆14Updated 11 months ago
- Various Ideas for Confounder Adjustment in Regression☆24Updated 2 years ago
- Personalized prioritization of driver genes in cancer☆9Updated 3 years ago
- An R package to increase interpretability of genes and SNPs (eg identified from GWAS and eQTL mapping)☆10Updated 2 years ago
- stageR package☆12Updated 2 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics☆12Updated last year
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆21Updated 4 years ago
- Tutorial for the analysis of scRNA-seq data in R☆18Updated 6 years ago
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Updated 6 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆13Updated 3 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated 7 months ago
- ☆10Updated 2 years ago
- GWAS and rare variants tests at high speed using regenie☆13Updated 4 months ago
- integrative pathway analysis with modern PCA methodology and gene selection☆11Updated last year
- cEll tyPe enrIChment☆14Updated 2 years ago
- Easy & parallel download of FASTQ files from public repositories (SRA, EGA, GDC)☆8Updated last month
- GEO RNA-seq Experiments Processing Pipeline☆21Updated 5 years ago
- Gene network analysis☆19Updated 2 years ago