Alternatives and similar repositories for SparseSignatures:

Users that are interested in SparseSignatures are comparing it to the libraries listed below

• nellore / runs
  Scripts for reproducing analyses of large RNA-seq datasets
  ☆15Updated 5 years ago
• malhamdoosh / EGSEA
  This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.
  ☆10Updated last year
• seandavi / MachineLearningIntro
  Machine learning use cases for teaching
  ☆13Updated 7 years ago
• csoneson / iCOBRA
  Interactive benchmarking of ranking and assignment methods
  ☆14Updated 2 months ago
• LieberInstitute / megadepth
  R interface to megadepth: BigWig and BAM related utilities
  ☆12Updated 3 months ago
• vals / python-gprofiler
  ☆12Updated 6 years ago
• liuqivandy / scRNABatchQC
  ☆12Updated 3 years ago
• Kayla-Morrell / CreateAPackage
  The vignette provided has a basic sketch of the steps we interactively will go through to build a package with devtools, explains version…
  ☆11Updated 4 years ago
• ELELAB / MoonlightR
  ☆17Updated 10 months ago
• stephaniehicks / methylCC
  R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms
  ☆19Updated 2 years ago
• hfang-bristol / XGR
  An R package to increase interpretability of genes and SNPs (eg identified from GWAS and eQTL mapping)
  ☆10Updated 2 years ago
• igordot / babelgene
  ☆12Updated 2 years ago
• uc-bd2k / GREP2
  GEO RNA-seq Experiments Processing Pipeline
  ☆21Updated 5 years ago
• ChristophH / Inferelator
  The official Inferelator repository maintained by current or former Bonneau lab members
  ☆9Updated 7 years ago
• StatGenPRD / STOPGAP
  Scripts for generating integrated dataset from publically available data sources to evaluate known genetic associations evidence of varyi…
  ☆11Updated 4 years ago
• mikelove / zinbwave-deseq2
  Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
  ☆31Updated 4 years ago
• waldronlab / TCGAutils
  Toolbox package for organizing and working with TCGA data
  ☆27Updated 2 months ago
• drisso / archive-RUVSeq
  Archived version of RUVSeq
  ☆8Updated 7 years ago
• waldronlab / PublicDataResources
  Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…
  ☆14Updated 2 months ago
• pwwang / biopipen
  A set of processes/pipelines for bioinformatics
  ☆13Updated 3 weeks ago
• hakyimlab / phenomexcan
  PhenomeXcan: mapping the genome to the phenome through the transcriptome
  ☆11Updated 4 years ago
• pachterlab / bears_analyses
  Examples of kallisto + sleuth
  ☆11Updated 7 years ago
• sarbal / EGAD
  Gene network analysis
  ☆19Updated 2 years ago
• shahcompbio / MultiModalMuSig.jl
  A Julia package for extracting mutation signatures using topic models
  ☆18Updated 3 years ago
• rujinwang / EPIC
  cEll tyPe enrIChment
  ☆14Updated 2 years ago
• nghiavtr / ISOP
  Isoform-level expression patterns in single-cell RNA-sequencing data
  ☆11Updated last year
• yigbt / multiGSEA
  The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.
  ☆18Updated 2 months ago
• cboix / epimap_vis
  Code for EpiMap data browser
  ☆14Updated 9 months ago
• heyuan7676 / ts_eQTLs
  Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model
  ☆21Updated 4 years ago
• benoukraflab / TFregulomeR-old
  TFregulomeR reveals transcription factors’ context-specific features and functions
  ☆16Updated 2 years ago