awilfert / PSAP-pipelineLinks
☆14Updated 8 years ago
Alternatives and similar repositories for PSAP-pipeline
Users that are interested in PSAP-pipeline are comparing it to the libraries listed below
Sorting:
- ☆40Updated 7 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- ☆78Updated 11 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 8 years ago
- Minimac3 is a low memory and computationally efficient implementation of the genotype imputation algorithms. Minimac3 is designed to hand…☆30Updated 3 years ago
- An awk-like VCF parser☆56Updated last year
- ☆27Updated 6 months ago
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- Report reverse and ambiguous strand SNPs in GWAS data☆33Updated 6 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 7 years ago
- tools to efficiently retrieve and calculate LD☆33Updated 4 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆33Updated 8 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- Fast fusion detection using kallisto☆79Updated 6 months ago
- gnomAD browser pre-ASHG 2018☆33Updated 5 years ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆52Updated 6 years ago
- Create regional association plots from GWAS or meta-analysis☆61Updated 5 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆54Updated 8 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- ☆38Updated 4 years ago
- BigWig and BAM utilities☆99Updated last year
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 9 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 7 months ago
- Multi-sample somatic variant caller☆52Updated 3 years ago