awilfert / PSAP-pipelineLinks
☆14Updated 7 years ago
Alternatives and similar repositories for PSAP-pipeline
Users that are interested in PSAP-pipeline are comparing it to the libraries listed below
Sorting:
- ☆78Updated 11 years ago
- An awk-like VCF parser☆56Updated last year
- tools to efficiently retrieve and calculate LD☆33Updated 3 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- ☆40Updated 7 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆78Updated last year
- highly-efficient & lightweight mutation signature matrix aggregation☆18Updated 3 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆35Updated 8 years ago
- Fast fusion detection using kallisto☆80Updated 2 months ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- Report reverse and ambiguous strand SNPs in GWAS data☆33Updated 6 years ago
- ☆26Updated 2 months ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- ☆33Updated 3 years ago
- Joint calling of gVCF, following GATK4 Best Practices☆12Updated 6 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆53Updated 8 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- ☆23Updated 8 months ago
- Mapped QC analysis program☆44Updated 7 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- High-definition reconstruction of clonal composition from next-generation sequencing data☆40Updated 9 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago