friend1ws / SAVNetLinks
detection of mutations causing splicing change
☆13Updated 2 years ago
Alternatives and similar repositories for SAVNet
Users that are interested in SAVNet are comparing it to the libraries listed below
Sorting:
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- ☆25Updated 4 years ago
- ☆14Updated 2 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated this week
- ☆21Updated 2 weeks ago
- IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split …☆16Updated 2 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- ☆13Updated this week
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- ☆18Updated 4 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- NGS duplicate marking☆19Updated 4 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated last month
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Structural variant pipeline☆17Updated 5 years ago
- 🍶 Genome assembly with short sequence reads☆25Updated last year
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆11Updated 5 years ago
- Two pass alignment for long reads☆22Updated 4 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆15Updated 6 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Updated 5 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Materials for Spring 2019 Applied Genomics Course☆21Updated 6 years ago
- Multi-sample cancer phylogeny reconstruction☆35Updated 7 years ago
- A webtool for the clinical interpretation of CNVs in rare disease patients☆12Updated 3 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated 3 weeks ago