friend1ws / SAVNetLinks
detection of mutations causing splicing change
☆13Updated 3 years ago
Alternatives and similar repositories for SAVNet
Users that are interested in SAVNet are comparing it to the libraries listed below
Sorting:
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 6 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- ☆23Updated last month
- ☆18Updated 5 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated this week
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆33Updated 3 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- ☆26Updated 5 years ago
- NGS duplicate marking☆19Updated 4 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆15Updated 6 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Updated 5 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split …☆16Updated 2 years ago
- Multi-sample cancer phylogeny reconstruction☆35Updated 8 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 3 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 3 months ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆21Updated 8 years ago
- A tool for Read Multi-Mapper Resolution☆24Updated 8 years ago
- ☆14Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago