detection of mutations causing splicing change
☆13Oct 6, 2022Updated 3 years ago
Alternatives and similar repositories for SAVNet
Users that are interested in SAVNet are comparing it to the libraries listed below
Sorting:
- Generate an enhanced VCF files from ClinVar XML Full releases☆15Feb 23, 2026Updated last week
- Linear-time, low-memory construction of variation graphs☆20Feb 3, 2020Updated 6 years ago
- Implicit Interval Tree with Interpolation Index☆42Jul 13, 2022Updated 3 years ago
- What's The Function of these genes?☆22Mar 17, 2017Updated 8 years ago
- Software for creating and comparing genome fingerprints.☆11Jun 30, 2024Updated last year
- K-means clustering for large single-cell datasets☆12Feb 10, 2026Updated 3 weeks ago
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆45Dec 17, 2025Updated 2 months ago
- paplot creates various dynamic and interactive reports for cancer genome analysis.☆26Feb 1, 2023Updated 3 years ago
- libstrbuf: A powerful string library for C☆17Oct 15, 2016Updated 9 years ago
- A Transcriptomics-Proteomics Integration Pipeline☆18Apr 11, 2024Updated last year
- CircSplice☆12Feb 27, 2019Updated 7 years ago
- A simple observation count database☆11Jan 13, 2026Updated last month
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Sep 26, 2016Updated 9 years ago
- R htmlwidget package for ideogram.js☆15Oct 26, 2022Updated 3 years ago
- ☆29Feb 17, 2021Updated 5 years ago
- deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches☆12May 5, 2024Updated last year
- ☆12Dec 1, 2019Updated 6 years ago
- Variant Alert!, a framework to monitor every significant alteration in variant classification and gene-disease association between two ve…☆14Jul 19, 2021Updated 4 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Dec 16, 2019Updated 6 years ago
- MEME motif-based sequence analysis tools (http://meme-suite.org), with FreeBSD tweaks☆15Jul 26, 2017Updated 8 years ago
- The Genome U-Plot is a JavaScript tool to visualize chromosomal abnormalities in the Human Genome using a U-shape layout.☆32Dec 10, 2022Updated 3 years ago
- SV detection tool for nanopore sequence reads☆97Jan 7, 2026Updated last month
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Oct 11, 2018Updated 7 years ago
- ☆15Sep 26, 2019Updated 6 years ago
- pybio is a comprehensive Python framework designed to streamline genomics operations. It offers a direct interface to Ensembl genome asse…☆14Oct 28, 2025Updated 4 months ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- AC-DIAMOND is a DNA-protein alignment tool☆16Oct 11, 2023Updated 2 years ago
- mitochondrial variant analysis tools☆15Mar 4, 2021Updated 5 years ago
- The user can generate Molecular Tumor Board reports for TCGA samples☆15Mar 21, 2020Updated 5 years ago
- Python based pipeline management software for clusters (but checkout toil: https://github.com/BD2KGenomics/toil, its successor)☆24Sep 4, 2017Updated 8 years ago
- A computational workflow for exitron splicing identification☆14Aug 30, 2024Updated last year
- Deep learning based prediction of IsoForm FUnctions from Sequences and Expression☆15Jul 28, 2025Updated 7 months ago
- ☆15Jan 19, 2018Updated 8 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Jan 10, 2017Updated 9 years ago
- Staden Package "io_lib" (sometimes referred to as libstaden-read by distributions). This contains code for reading and writing a varie…☆40Jul 14, 2025Updated 7 months ago
- Benchmark structural variant calls against a reference set☆18Jan 26, 2026Updated last month
- Read CRAM v3 and v2 in node or in the browser☆18Feb 14, 2026Updated 2 weeks ago