friend1ws / SAVNet
detection of mutations causing splicing change
☆13Updated 2 years ago
Alternatives and similar repositories for SAVNet:
Users that are interested in SAVNet are comparing it to the libraries listed below
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- ☆18Updated 4 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 3 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 2 years ago
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆21Updated 7 years ago
- ☆21Updated last month
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 6 years ago
- Simplify snpEff annotations for interesting cases☆21Updated 6 years ago
- ☆12Updated 2 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆17Updated last week
- ☆14Updated last year
- v2.x of the microassembly based somatic variant caller☆20Updated this week
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 8 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆27Updated 2 months ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 6 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Comprehensive Human Expressed SequenceS☆16Updated 7 months ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆31Updated 2 years ago
- Integrative analysis of complex structural variants☆21Updated 4 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆28Updated 5 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 6 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 weeks ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- ☆22Updated 7 months ago
- ☆23Updated 5 years ago