mahmoudibrahim / genesorteR
Feature Ranking in (possibly large) Clustered Single Cell Data
☆40Updated 4 years ago
Alternatives and similar repositories for genesorteR:
Users that are interested in genesorteR are comparing it to the libraries listed below
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆44Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆35Updated last year
- ☆59Updated 5 years ago
- ☆46Updated 5 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆47Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆63Updated 6 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆35Updated 4 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 4 months ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 9 months ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆16Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆74Updated 11 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆37Updated 3 years ago
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆33Updated 4 years ago
- scWGCNA☆58Updated 2 years ago
- ☆61Updated 9 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆77Updated 7 months ago
- Clone of the Bioconductor repository for the scran package.☆41Updated 7 months ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- ☆54Updated 4 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆31Updated 10 months ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- ☆40Updated 4 years ago
- Functions for single cell data analysis☆31Updated 3 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- Analysis of cell-cell communication at single-cell resolution☆100Updated 7 months ago
- Gene set enrichment analysis for single-cell RNAseq data☆27Updated 2 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated this week