mahmoudibrahim / genesorteR
Feature Ranking in (possibly large) Clustered Single Cell Data
☆40Updated 3 years ago
Alternatives and similar repositories for genesorteR:
Users that are interested in genesorteR are comparing it to the libraries listed below
- A tool for removing doublets from single-cell RNA-seq data☆71Updated 4 years ago
- ☆44Updated 5 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆47Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆59Updated 4 months ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆32Updated last year
- ☆59Updated 5 years ago
- scWGCNA☆56Updated 2 years ago
- Functions for single cell data analysis☆29Updated 3 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆72Updated 5 months ago
- scGSVA: Perform GSVA for single cell RNA seq☆53Updated 3 months ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 2 months ago
- Functional Inference of Gene Regulation☆40Updated 7 months ago
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆14Updated last year
- ☆38Updated 4 years ago
- ☆39Updated 3 years ago
- Network construction Algorithm☆20Updated 5 months ago
- Method for de novo mutation calling from droplet based single cell RNA seq data☆12Updated 3 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆35Updated 3 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆32Updated 4 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 2 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆77Updated last year
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆21Updated last year
- Inferring CNV data from single cell ATAC seq☆23Updated last year
- simpler single cell RNAseq data clustering☆40Updated 9 months ago
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated last year
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆33Updated last year
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆42Updated last year
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆20Updated 2 years ago